miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37589_ngi-mir-281:mirbase
Length = 73
Score = 145 bits (73), Expect = 7e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 15 cgctataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgctataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgc 60
Query: 75 tctctttgtggac 87
|||||||||||||
Sbjct: 61 tctctttgtggac 73
>37620_nlo-mir-281:mirbase
Length = 73
Score = 145 bits (73), Expect = 7e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 15 cgctataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgc 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgctataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgc 60
Query: 75 tctctttgtggac 87
|||||||||||||
Sbjct: 61 tctctttgtggac 73
>35386_ame-mir-281:mirbase
Length = 103
Score = 97.6 bits (49), Expect = 2e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 15 cgctataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgc 74
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct: 15 cgctataaagagagctatccatcgacagtatggttataatagacactgtcatggagttgc 74
Query: 75 tctctttgt 83
|||||||||
Sbjct: 75 tctctttgt 83
>35305_aga-mir-281:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 54/63 (85%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgctctc 78
|||||||||||||||| ||||||||| | |||| | |||||||||||| ||||||||
Sbjct: 17 ataaagagagctatccgtcgacagta--gggatataattcactgtcatggaattgctctc 74
Query: 79 ttt 81
|||
Sbjct: 75 ttt 77
>35210_aae-mir-281:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgctctc 78
|||||||||||||||| ||||||||| || || ||| |||||||||||| ||||||||
Sbjct: 18 ataaagagagctatccgtcgacagtagggatat-gat-tcactgtcatggaattgctctc 75
Query: 79 ttt 81
|||
Sbjct: 76 ttt 78
>35557_bmo-mir-281:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 5e-06
Identities = 53/61 (86%), Gaps = 4/61 (6%)
Strand = Plus / Plus
Query: 22 aagagagctatccatcgacagtatgg-tgatagatgacactgtcatggacttgctctctt 80
||||||||||||| |||||||||| | ||||| | |||||||||||| ||||||||||
Sbjct: 11 aagagagctatccgtcgacagtattgctgataaa---cactgtcatggagttgctctctt 67
Query: 81 t 81
|
Sbjct: 68 t 68
>36038_cqu-mir-281:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 5e-06
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgctctc 78
|||||||||||||||| ||||||||| || || ||| |||||||||||| ||||||||
Sbjct: 23 ataaagagagctatccgtcgacagtagggatat-gat-tcactgtcatggaattgctctc 80
Query: 79 ttt 81
|||
Sbjct: 81 ttt 83
>36123_dan-mir-281-1:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 acactgtcatggacttgctctctttgt 83
||||||||||||| |||||||||||||
Sbjct: 50 acactgtcatggaattgctctctttgt 76
>37781_tca-mir-281:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 5e-06
Identities = 51/60 (85%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 22 aagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgctctcttt 81
||||||||||||| |||||||||| ||| | ||||||||||||| |||||||||||
Sbjct: 10 aagagagctatccgtcgacagtat----ataatttacactgtcatggagttgctctcttt 65
>37782_tca-mir-281:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 5e-06
Identities = 51/60 (85%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 22 aagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgctctcttt 81
||||||||||||| |||||||||| ||| | ||||||||||||| |||||||||||
Sbjct: 10 aagagagctatccgtcgacagtat----ataatttacactgtcatggagttgctctcttt 65
>36201_der-mir-281-1:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggacttgctctctttgt 83
|||||||||||| |||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgt 80
>36424_dme-mir-281-1:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggacttgctctctttgt 83
|||||||||||| |||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgt 80
>36425_dme-mir-281-1:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggacttgctctctttgt 83
|||||||||||| |||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgt 80
>37161_dse-mir-281-1:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggacttgctctctttgt 83
|||||||||||| |||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgt 80
>37238_dsi-mir-281:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggacttgctctctttgt 83
|||||||||||| |||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgt 80
>37530_dya-mir-281-1:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 58 cactgtcatggacttgctctctttgt 83
|||||||||||| |||||||||||||
Sbjct: 55 cactgtcatggaattgctctctttgt 80
>24703_bfl-mir-281:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 acactgtcatggacttgctctcttt 81
||||||||||||| |||||||||||
Sbjct: 55 acactgtcatggagttgctctcttt 79
>35081_api-mir-281:mirbase
Length = 62
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 acactgtcatggacttgctctcttt 81
||||||||||||| |||||||||||
Sbjct: 36 acactgtcatggagttgctctcttt 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 22 aagagagctatccatcgacagtat 45
||||||||||||| ||||||||||
Sbjct: 1 aagagagctatccgtcgacagtat 24
>36124_dan-mir-281-2:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 60 actgtcatggaattgctctctttgt 84
>36202_der-mir-281-2:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgt 82
>36290_dgr-mir-281-1:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgt 78
>36291_dgr-mir-281-2:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 59 actgtcatggaattgctctctttgt 83
>36426_dme-mir-281-2:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgt 82
>36427_dme-mir-281-2:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgt 82
>36798_dmo-mir-281-1:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgt 78
>36799_dmo-mir-281-2:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 59 actgtcatggaattgctctctttgt 83
>36875_dpe-mir-281-1:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgt 78
>36876_dpe-mir-281-2:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagt 43
|||||||||||||||| ||||||||
Sbjct: 12 ataaagagagctatccgtcgacagt 36
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgt 81
>36955_dps-mir-281-1:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgt 78
>36956_dps-mir-281-2:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 19 ataaagagagctatccatcgacagt 43
|||||||||||||||| ||||||||
Sbjct: 12 ataaagagagctatccgtcgacagt 36
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgt 81
>37162_dse-mir-281-2:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgt 82
>37375_dvi-mir-281-1:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 54 actgtcatggaattgctctctttgt 78
>37376_dvi-mir-281-2:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgt 81
>37454_dwi-mir-281-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 56 actgtcatggaattgctctctttgt 80
>37455_dwi-mir-281-2:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 63 actgtcatggaattgctctctttgt 87
>37531_dya-mir-281-2:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 59 actgtcatggacttgctctctttgt 83
||||||||||| |||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgt 82
