miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37695_tca-mir-8:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 actgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggt 60
Query: 61 aaagatgtcctcc 73
|||||||||||||
Sbjct: 61 aaagatgtcctcc 73
>37602_nlo-mir-8:mirbase
Length = 86
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 8 ctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>37635_nvi-mir-8:mirbase
Length = 86
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 8 ctgtttacatcttaccgggcagcattagattacatttgaattttctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>36165_der-mir-8:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 2e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||| | | ||||||| |||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>36345_dme-mir-8:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 2e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||| | | ||||||| |||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>36346_dme-mir-8:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 2e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||| | | ||||||| |||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>37203_dsi-mir-8:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 2e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||| | | ||||||| |||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>37493_dya-mir-8:mirbase
Length = 87
Score = 79.8 bits (40), Expect = 2e-16
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||| | | ||||||| |||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattaga-tcctttttataactctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>36006_cqu-mir-8:mirbase
Length = 77
Score = 77.8 bits (39), Expect = 9e-16
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacatttta--tacttctaatactgtcagg 59
||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct: 3 ctgttcacatcttaccgggcagcattagat-attttttaaatacttctaatactgtcagg 61
Query: 60 taaagatgtc 69
||||||||||
Sbjct: 62 taaagatgtc 71
>35171_aae-mir-8:mirbase
Length = 79
Score = 73.8 bits (37), Expect = 1e-14
Identities = 64/72 (88%), Gaps = 7/72 (9%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacatttt----atacttctaatactgtca 57
||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 3 ctgttcacatcttaccgggcagcattagat---atttttgaaatacttctaatactgtca 59
Query: 58 ggtaaagatgtc 69
||||||||||||
Sbjct: 60 ggtaaagatgtc 71
>35344_ame-mir-8:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||||| | || | |||||||||||||||||||
Sbjct: 8 ctgttcacatcttaccgggcagcattagattgaagttga-ccttctaatactgtcaggta 66
Query: 62 aagatgtc 69
||||||||
Sbjct: 67 aagatgtc 74
>36836_dpe-mir-8:mirbase
Length = 87
Score = 71.9 bits (36), Expect = 6e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| |||||||||||||||||||||||| | || |||| |||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattagatc-ctttagatacctctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>36912_dps-mir-8:mirbase
Length = 87
Score = 71.9 bits (36), Expect = 6e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| |||||||||||||||||||||||| | || |||| |||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattagatc-ctttagatacctctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>37125_dse-mir-8:mirbase
Length = 87
Score = 71.9 bits (36), Expect = 6e-14
Identities = 61/68 (89%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| ||||||||||||||||||||||| | | ||||| | |||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattaga-tcctttttaaaactctaatactgtcaggta 67
Query: 62 aagatgtc 69
||||||||
Sbjct: 68 aagatgtc 75
>36763_dmo-mir-8:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 4e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacatttt---atacttctaatactgtcag 58
||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||||||
Sbjct: 8 ctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtcag 67
Query: 59 gtaaagatgtc 69
|||||||||||
Sbjct: 68 gtaaagatgtc 78
>36087_dan-mir-8:mirbase
Length = 88
Score = 63.9 bits (32), Expect = 1e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 61
||||| |||||||||||||||||||||||| | | ||| |||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattagatcctttctgataactctaatactgtcaggta 68
Query: 62 aagatgtc 69
||||||||
Sbjct: 69 aagatgtc 76
>36253_dgr-mir-8:mirbase
Length = 91
Score = 63.9 bits (32), Expect = 1e-11
Identities = 63/71 (88%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagat--tacattt-tatacttctaatactgtcag 58
||||| |||||||||||||||||||||||| | |||| ||| |||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcag 68
Query: 59 gtaaagatgtc 69
|||||||||||
Sbjct: 69 gtaaagatgtc 79
>37339_dvi-mir-8:mirbase
Length = 91
Score = 63.9 bits (32), Expect = 1e-11
Identities = 63/71 (88%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagat--tacattt-tatacttctaatactgtcag 58
||||| |||||||||||||||||||||||| | |||| ||| |||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcag 68
Query: 59 gtaaagatgtc 69
|||||||||||
Sbjct: 69 gtaaagatgtc 79
>34999_dpu-mir-8:mirbase
Length = 98
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgtcaggtaaagatgtcctcc 73
||||||||||||||||||||||||||||||
Sbjct: 58 ttctaatactgtcaggtaaagatgtcctcc 87
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 catcttaccgggcagcattagatt 32
||||||||||||||||||||||||
Sbjct: 10 catcttaccgggcagcattagatt 33
>35518_bmo-mir-8:mirbase
Length = 102
Score = 60.0 bits (30), Expect = 2e-10
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 9 catcttaccgggcagcattagattacattttatactt-ctaatactgtcaggtaaagatg 67
|||||||||||||||||||||| | | | |||| || ||||||||||||||||||||||
Sbjct: 21 catcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaaagatg 80
Query: 68 tc 69
||
Sbjct: 81 tc 82
>35274_aga-mir-8:mirbase
Length = 86
Score = 58.0 bits (29), Expect = 9e-10
Identities = 62/71 (87%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagattacatttt---atacttctaatactgtcag 58
||||| ||||||||||||||||||||||| || || | ||| |||||||||||||||
Sbjct: 7 ctgttcacatcttaccgggcagcattaga-tatgttatcggatatttctaatactgtcag 65
Query: 59 gtaaagatgtc 69
|||||||||||
Sbjct: 66 gtaaagatgtc 76
>37561_lmi-mir-8:mirbase
Length = 61
Score = 58.0 bits (29), Expect = 9e-10
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 9 catcttaccgggcagcattagattacattttatacttctaatactgtcaggtaaagatgt 68
|||||||||||||||||||||||| | | | | ||||||||||||||||||| |||||
Sbjct: 1 catcttaccgggcagcattagattgcgactgagatttctaatactgtcaggtaacgatgt 60
Query: 69 c 69
|
Sbjct: 61 c 61
>38851_lgi-mir-8:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgtcaggtaaagatgtcc 70
|||||||||||||||||||||||||||
Sbjct: 58 ttctaatactgtcaggtaaagatgtcc 84
>38728_cte-mir-8:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 cttctaatactgtcaggtaaagatgtc 69
|||||||||||||||||||||||||||
Sbjct: 56 cttctaatactgtcaggtaaagatgtc 82
>34963_isc-mir-8:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgtcaggtaaagatgtcc 70
|||||||||||||||||||||||||||
Sbjct: 55 ttctaatactgtcaggtaaagatgtcc 81
>37414_dwi-mir-8:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2 ctgttaacatcttaccgggcagcattagatt 32
||||| |||||||||||||||||||||||||
Sbjct: 9 ctgttcacatcttaccgggcagcattagatt 39
>35047_api-mir-8:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 tctaatactgtcaggtaaagatgtc 69
|||||||||||||||||| ||||||
Sbjct: 39 tctaatactgtcaggtaatgatgtc 63
>38969_sja-mir-8:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 44 ttctaatactgtcaggtaaagatg 67
|||||||||||| |||||||||||
Sbjct: 41 ttctaatactgttaggtaaagatg 64
>38968_sja-mir-8:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 44 ttctaatactgtcaggtaaagatg 67
|||||||||||| |||||||||||
Sbjct: 41 ttctaatactgttaggtaaagatg 64
>39065_sme-mir-8a:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgtcaggtaaagatg 67
|||||||||||||||||| ||||
Sbjct: 43 tctaatactgtcaggtaacgatg 65
