miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37705_tca-mir-10:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ctctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctag 60
Query: 61 agaggtttgtg 71
|||||||||||
Sbjct: 61 agaggtttgtg 71
>37604_nlo-mir-10:mirbase
Length = 100
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 ctctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctag 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12 ctctacatctaccctgtagatccgaatttgtttgaagtcaggcgacaaattcggttctag 71
Query: 61 agaggtttgtg 71
|||||||||||
Sbjct: 72 agaggtttgtg 82
>37637_nvi-mir-10:mirbase
Length = 100
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 1 ctctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctag 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12 ctctacatctaccctgtagatccgaatttgtttgaagtcaggcgacaaattcggttctag 71
Query: 61 agaggtttgtg 71
|||||||||||
Sbjct: 72 agaggtttgtg 82
>35523_bmo-mir-10:mirbase
Length = 84
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 3 ctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctagag 62
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 7 ctacatctaccctgtagatccgaatttgtttgaagtgaggcgacaaattcggttctagag 66
Query: 63 aggtttgtg 71
|||||||||
Sbjct: 67 aggtttgtg 75
>35050_api-mir-10:mirbase
Length = 83
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 ctctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctag 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4 ctctacatctaccctgtagatccgaatttgtttgaaaaacggcgacaaattcggttctag 63
Query: 61 agaggtttgtg 71
|||||||||||
Sbjct: 64 agaggtttgtg 74
>35348_ame-mir-10-1:mirbase
Length = 100
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 ctctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctag 60
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 12 ctctacatctaccctgtagatccgaatttgtttgataagaggcgacaaattcggttctag 71
Query: 61 agaggtttgtg 71
|||||||||||
Sbjct: 72 agaggtttgtg 82
>35349_ame-mir-10-2:mirbase
Length = 100
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 ctctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctag 60
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 12 ctctacatctaccctgtagatccgaatttgtttgataagaggcgacaaattcggttctag 71
Query: 61 agaggtttgtg 71
|||||||||||
Sbjct: 72 agaggtttgtg 82
>36008_cqu-mir-10:mirbase
Length = 86
Score = 97.6 bits (49), Expect = 1e-21
Identities = 68/74 (91%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 2 tctacatctaccctgtagatccgaatttgtttgaa----atcaggcgacaaattcggttc 57
||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 4 tctacatctaccctgtagatccgaatttgtttgaatataaacaagcgacaaattcggttc 63
Query: 58 tagagaggtttgtg 71
||||||||||||||
Sbjct: 64 tagagaggtttgtg 77
>35177_aae-mir-10:mirbase
Length = 89
Score = 93.7 bits (47), Expect = 2e-20
Identities = 68/75 (90%), Gaps = 5/75 (6%)
Strand = Plus / Plus
Query: 2 tctacatctaccctgtagatccgaatttgtttgaa-----atcaggcgacaaattcggtt 56
||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 6 tctacatctaccctgtagatccgaatttgtttgaatatttaacaagcgacaaattcggtt 65
Query: 57 ctagagaggtttgtg 71
|||||||||||||||
Sbjct: 66 ctagagaggtttgtg 80
>37563_lmi-mir-10:mirbase
Length = 59
Score = 85.7 bits (43), Expect = 4e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctagagaggttt 68
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1 taccctgtagatccgaatttgtttgacatagtgcgacaaattcggttctagagaggttt 59
>34964_isc-mir-10:mirbase
Length = 73
Score = 77.8 bits (39), Expect = 9e-16
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 3 ctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctagag 62
||||||||||||||||||||||||||||| || || || | ||||||||||||||||||
Sbjct: 1 ctacatctaccctgtagatccgaatttgtctgcaacaagactacaaattcggttctagag 60
Query: 63 agg 65
|||
Sbjct: 61 agg 63
>35001_dpu-mir-10:mirbase
Length = 101
Score = 67.9 bits (34), Expect = 9e-13
Identities = 62/69 (89%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 1 ctctacatctaccctgtagatccgaatttgt--ttgaaatcaggcgacaaattcggttct 58
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||
Sbjct: 11 ctctacatctaccctgtagatccgaatttgtagttg-catcacaagacaaattcggttct 69
Query: 59 agagaggtt 67
|||||||||
Sbjct: 70 agagaggtt 78
>35278_aga-mir-10:mirbase
Length = 102
Score = 61.9 bits (31), Expect = 5e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 2 tctacatctaccctgtagatccgaatttgtttgaa 36
|||||||| ||||||||||||||||||||||||||
Sbjct: 13 tctacatccaccctgtagatccgaatttgtttgaa 47
>36840_dpe-mir-10:mirbase
Length = 77
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgtttgaaatcaggc-----gacaaattcggttctagag 62
|||||||||||||||||||||||||| | || || |||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgttttacattagctttaaggacaaattcggttctagag 65
Query: 63 aggtttgtg 71
|||||||||
Sbjct: 66 aggtttgtg 74
>36916_dps-mir-10:mirbase
Length = 77
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgtttgaaatcaggc-----gacaaattcggttctagag 62
|||||||||||||||||||||||||| | || || |||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgttttacattagctttaaggacaaattcggttctagag 65
Query: 63 aggtttgtg 71
|||||||||
Sbjct: 66 aggtttgtg 74
>36091_dan-mir-10:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggtttgtg 71
||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtg 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgttt 33
||||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgttt 31
>36169_der-mir-10:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggtttgtg 71
||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtg 74
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ctacatctaccctgtagatccgaatttgttt 33
|||| ||||||||||||||||||||||||||
Sbjct: 1 ctacgtctaccctgtagatccgaatttgttt 31
>36257_dgr-mir-10:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggtttgtg 71
||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtg 74
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgtt 32
|||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgtt 30
>36353_dme-mir-10:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggtttgtg 71
||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtg 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgttt 33
||||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgttt 31
>36354_dme-mir-10:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggtttgtg 71
||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtg 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgttt 33
||||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgttt 31
>37129_dse-mir-10:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggtttgtg 71
||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtg 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgttt 33
||||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgttt 31
>37205_dsi-mir-10:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggtttgtg 71
||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtg 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgttt 33
||||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgttt 31
>37498_dya-mir-10:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggtttgtg 71
||||||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggtttgtg 74
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgttt 33
||||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgttt 31
>37420_dwi-mir-10:mirbase
Length = 78
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 ctacatctaccctgtagatccgaatttgttt 33
|||| ||||||||||||||||||||||||||
Sbjct: 1 ctacgtctaccctgtagatccgaatttgttt 31
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggttt 68
|||||||||||||||||||||||||
Sbjct: 48 gacaaattcggttctagagaggttt 72
>36767_dmo-mir-10:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgtt 32
|||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgtt 30
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggttt 68
|||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggttt 71
>37343_dvi-mir-10:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 gacaaattcggttctagagaggttt 68
|||||||||||||||||||||||||
Sbjct: 47 gacaaattcggttctagagaggttt 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 accctgtagatccgaatttgtt 32
||||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgtt 30
>34809_spu-mir-10:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 tacatctaccctgtagatccgaatttgt 31
|||||| |||||||||||||||||||||
Sbjct: 20 tacatcaaccctgtagatccgaatttgt 47
>34866_sko-mir-10:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tctaccctgtagatccgaatttgt 31
||||||||||||||||||||||||
Sbjct: 18 tctaccctgtagatccgaatttgt 41
>34197_dre-mir-10a:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgtttgaa 36
|||||||||||||||||||||| ||||
Sbjct: 18 taccctgtagatccgaatttgtgtgaa 44
>38853_lgi-mir-10:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 21 taccctgtagatccgaatttgt 42
>24650_bfl-mir-10a:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>25694_xtr-mir-10a:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>25889_gga-mir-10a:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>26621_cfa-mir-10:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 1 taccctgtagatccgaatttgt 22
>26943_eca-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>27331_mdo-mir-10a:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 15 taccctgtagatccgaatttgt 36
>27477_age-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>27587_sla-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>27648_mml-mir-10a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>28256_ggo-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>28358_hsa-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>30040_ppa-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>30144_ptr-mir-10a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 21 taccctgtagatccgaatttgt 42
>31423_oan-mir-10a:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 28 taccctgtagatccgaatttgt 49
>31773_mmu-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>32655_rno-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>32656_rno-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>33126_bta-mir-10a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 22 taccctgtagatccgaatttgt 43
>33909_ssc-mir-10a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgt 31
||||||||||||||||||||||
Sbjct: 9 taccctgtagatccgaatttgt 30
>34543_fru-mir-10c:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tctacatctaccctgtagatccgaatttgt 31
|||| |||||||||||||||||| ||||||
Sbjct: 7 tctatatctaccctgtagatccggatttgt 36
>34691_tni-mir-10c:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tctacatctaccctgtagatccgaatttgt 31
|||| |||||||||||||||||| ||||||
Sbjct: 13 tctatatctaccctgtagatccggatttgt 42
>34198_dre-mir-10b-1:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 taccctgtagatccgaatttgtttgaaa 37
||||||||||| |||||||||| |||||
Sbjct: 10 taccctgtagaaccgaatttgtgtgaaa 37
