miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37750_tca-mir-190:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 gtgagttgctataagatatgtttgatattcttggttgtatttttaattcacccaggagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagttgctataagatatgtttgatattcttggttgtatttttaattcacccaggagtc 60
Query: 61 aaacatattattatagaagcgtcacg 86
||||||||||||||||||||||||||
Sbjct: 61 aaacatattattatagaagcgtcacg 86
>37225_dsi-mir-190:mirbase
Length = 89
Score = 61.9 bits (31), Expect = 7e-11
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69
||||||||||||||||||||||||||| || | ||||||||||| |||||||||||
Sbjct: 14 agatatgtttgatattcttggttgtatcattcaaaagttcacccaggaatcaaacatatt 73
Query: 70 atta 73
||||
Sbjct: 74 atta 77
>35372_ame-mir-190:mirbase
Length = 100
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 12 taagatatgtttgatattcttggttgtattttta--attcacccaggagtcaaacatatt 69
||||||||||||||||||||||||||| |||| | | || |||||| |||||||||||
Sbjct: 23 taagatatgtttgatattcttggttgttttttaaagaatcgaccaggaatcaaacatatt 82
Query: 70 attat 74
|||||
Sbjct: 83 attat 87
>35197_aae-mir-190:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/65 (87%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt---atttttaat--tcacccaggagtcaaacatat 68
||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||
Sbjct: 15 agatatgtttgatattcttggttgttaaattttatattatcacccaggaatcaaacatat 74
Query: 69 tatta 73
|||||
Sbjct: 75 tatta 79
>36026_cqu-mir-190-1:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/65 (87%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt---atttttaat--tcacccaggagtcaaacatat 68
||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||
Sbjct: 15 agatatgtttgatattcttggttgttaaattttatattatcacccaggaatcaaacatat 74
Query: 69 tatta 73
|||||
Sbjct: 75 tatta 79
>36027_cqu-mir-190-2:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 57/65 (87%), Gaps = 5/65 (7%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt---atttttaat--tcacccaggagtcaaacatat 68
||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||
Sbjct: 15 agatatgtttgatattcttggttgttaaattttatattatcacccaggaatcaaacatat 74
Query: 69 tatta 73
|||||
Sbjct: 75 tatta 79
>36395_dme-mir-190:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 55/64 (85%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69
||||||||||||||||||||||||| | || | ||||||||||| |||||||||||
Sbjct: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
Query: 70 atta 73
||||
Sbjct: 84 atta 87
>36396_dme-mir-190:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 55/64 (85%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtattttt----aattcacccaggagtcaaacatatt 69
||||||||||||||||||||||||| | || | ||||||||||| |||||||||||
Sbjct: 24 agatatgtttgatattcttggttgtttcattcaaaagttcacccaggaatcaaacatatt 83
Query: 70 atta 73
||||
Sbjct: 84 atta 87
>37654_nvi-mir-190:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtat 40
|||||||||||||||||||||||||||
Sbjct: 24 agatatgtttgatattcttggttgtat 50
>35542_bmo-mir-190:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgtat-ttttaattcacccaggagtcaaacatatta 70
||||||||||||||||||||||||| | |||| |||||| ||| ||||||||||||
Sbjct: 17 agatatgtttgatattcttggttgtttgttttggatcacccgggaatcaaacatatta 74
>36938_dps-mir-190:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttg-tatttttaa---ttcacccaggagtcaaacatatt 69
|||||||||||||||||||||||| || || || ||||||||||| |||||||||||
Sbjct: 17 agatatgtttgatattcttggttgttacattcaagagttcacccaggaatcaaacatatt 76
Query: 70 atta 73
||||
Sbjct: 77 atta 80
>35067_api-mir-190:mirbase
Length = 68
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt 38
|||||||||||||||||||||||||
Sbjct: 7 agatatgtttgatattcttggttgt 31
>35294_aga-mir-190:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 agatatgtttgatattcttggttgt 38
|||||||||||||||||||||||||
Sbjct: 24 agatatgtttgatattcttggttgt 48
