miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37754_tca-mir-210:mirbase
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 ctcactgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctcactgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtga 60
Query: 61 cagcggctattgtggg 76
||||||||||||||||
Sbjct: 61 cagcggctattgtggg 76
>36863_dpe-mir-210:mirbase
Length = 84
Score = 75.8 bits (38), Expect = 4e-15
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 10 tgcagctgctggccactgcacaagattagat---ttaagactcttgtgcgtgtgacagcg 66
Query: 66 gctattgt 73
||||||||
Sbjct: 67 gctattgt 74
>36940_dps-mir-210a:mirbase
Length = 94
Score = 75.8 bits (38), Expect = 4e-15
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 10 tgcagctgctggccactgcacaagattagat---ttaagactcttgtgcgtgtgacagcg 66
Query: 66 gctattgt 73
||||||||
Sbjct: 67 gctattgt 74
>36941_dps-mir-210b:mirbase
Length = 109
Score = 75.8 bits (38), Expect = 4e-15
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Minus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 85 tgcagctgctggccactgcacaagattagat---ttaagactcttgtgcgtgtgacagcg 29
Query: 66 gctattgt 73
||||||||
Sbjct: 28 gctattgt 21
>36111_dan-mir-210:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
Query: 66 gctattgt 73
||||||||
Sbjct: 69 gctattgt 76
>36189_der-mir-210:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
Query: 66 gctattgt 73
||||||||
Sbjct: 69 gctattgt 76
>36399_dme-mir-210:mirbase
Length = 100
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 13 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 69
Query: 66 gctattgt 73
||||||||
Sbjct: 70 gctattgt 77
>36400_dme-mir-210:mirbase
Length = 100
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 13 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 69
Query: 66 gctattgt 73
||||||||
Sbjct: 70 gctattgt 77
>37149_dse-mir-210:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
Query: 66 gctattgt 73
||||||||
Sbjct: 69 gctattgt 76
>37227_dsi-mir-210:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
Query: 66 gctattgt 73
||||||||
Sbjct: 69 gctattgt 76
>37442_dwi-mir-210:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
Query: 66 gctattgt 73
||||||||
Sbjct: 69 gctattgt 76
>37517_dya-mir-210:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 9e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagac---ttaagactcttgtgcgtgtgacagcg 68
Query: 66 gctattgt 73
||||||||
Sbjct: 69 gctattgt 76
>37564_lmi-mir-210:mirbase
Length = 62
Score = 67.9 bits (34), Expect = 9e-13
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 9 agctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcggct 68
||||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct: 1 agctgctggacactgcacaagattagcgattaaaagactcttgtgcgtgtgacagcggct 60
Query: 69 at 70
||
Sbjct: 61 at 62
>37582_ngi-mir-210:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 4e-12
Identities = 62/71 (87%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| || | |||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcg 67
Query: 66 gctattgtggg 76
||||| |||||
Sbjct: 68 gctatggtggg 78
>35374_ame-mir-210:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 57/65 (87%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| || | |||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcg 67
Query: 66 gctat 70
|||||
Sbjct: 68 gctat 72
>37655_nvi-mir-210:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 6e-11
Identities = 57/65 (87%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| || | |||||||||||||||||||||
Sbjct: 11 tgcagctgctggccactgcacaagattagacat---aagactcttgtgcgtgtgacagcg 67
Query: 66 gctat 70
|||||
Sbjct: 68 gctat 72
>35543_bmo-mir-210:mirbase
Length = 92
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 7 gcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcgg 66
||||||||||| | |||||||||||||| | || ||||||||||||||||||||||
Sbjct: 14 gcagctgctggccactgcacaagattagtcaagtttatactcttgtgcgtgtgacagcgg 73
Query: 67 ctattg 72
||||||
Sbjct: 74 ctattg 79
>36787_dmo-mir-210:mirbase
Length = 86
Score = 60.0 bits (30), Expect = 2e-10
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| | | |||||||||||||||||||||
Sbjct: 12 tgcagctgctggccactgcacaagattagac---tcaagactcttgtgcgtgtgacagcg 68
Query: 66 gctattgt 73
||||||||
Sbjct: 69 gctattgt 76
>37363_dvi-mir-210:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 2e-10
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 tgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtgacagcg 65
|||||||||||| | ||||||||||||||| | | |||||||||||||||||||||
Sbjct: 10 tgcagctgctggccactgcacaagattagac---tcaagactcttgtgcgtgtgacagcg 66
Query: 66 gctattgt 73
||||||||
Sbjct: 67 gctattgt 74
>36278_dgr-mir-210:mirbase
Length = 86
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 actcttgtgcgtgtgacagcggctattgt 73
|||||||||||||||||||||||||||||
Sbjct: 48 actcttgtgcgtgtgacagcggctattgt 76
>35199_aae-mir-210:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 61/72 (84%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 1 ctcactgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtga 60
|||| ||||||||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 1 ctcattgcagctgctgaccactgcacaagattagat----tatgactcttgtgcgtgtga 56
Query: 61 cagcggctattg 72
|| |||||||||
Sbjct: 57 caacggctattg 68
>36028_cqu-mir-210:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 61/72 (84%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 1 ctcactgcagctgctggacgctgcacaagattagatattttagaactcttgtgcgtgtga 60
|||| ||||||||||| | |||||||||||||||| || ||||||||||||||||
Sbjct: 1 ctcattgcagctgctgaccactgcacaagattagat----tatgactcttgtgcgtgtga 56
Query: 61 cagcggctattg 72
|| |||||||||
Sbjct: 57 caacggctattg 68
>35295_aga-mir-210:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 actcttgtgcgtgtgacagcggctattgtggg 76
|||||||||||||||||| |||||||| ||||
Sbjct: 45 actcttgtgcgtgtgacaacggctattatggg 76
>25831_xtr-mir-210:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 57 tgtgcgtgtgacagcggcta 76
>27426_mdo-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggcta 69
>34366_dre-mir-210:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggcta 68
>34634_fru-mir-210:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggcta 75
>34782_tni-mir-210:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggcta 69
||||||||||||||||||||
Sbjct: 48 tgtgcgtgtgacagcggcta 67
>24695_bfl-mir-210:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 62 tgtgcgtgtgacagcggct 80
>25526_pma-mir-210:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
>26770_cfa-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>27806_mml-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>28528_hsa-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>30287_ptr-mir-210:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>31937_mmu-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>32801_rno-mir-210:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 67 tgtgcgtgtgacagcggct 85
>33068_rno-mir-3574:mirbase
Length = 118
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 50 tgtgcgtgtgacagcggct 32
>33287_bta-mir-210:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 56 tgtgcgtgtgacagcggct 74
>34038_ssc-mir-210:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgtgcgtgtgacagcggct 68
|||||||||||||||||||
Sbjct: 49 tgtgcgtgtgacagcggct 67
