miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37757_tca-mir-252a:mirbase
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 aaagactgtcctgttactaagtactagtgccgcaggagtacattcgacctcctgctgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagactgtcctgttactaagtactagtgccgcaggagtacattcgacctcctgctgctc 60
Query: 61 aagtgcttatcaatgggcacagaatga 87
|||||||||||||||||||||||||||
Sbjct: 61 aagtgcttatcaatgggcacagaatga 87
>35201_aae-mir-252:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 ttactaagtactagtgccgcaggagtacattcgacctcctgctgctcaagtgcttatc 71
||||||||||||||||||||||||| | ||| || | |||||||| ||||||||||||
Sbjct: 8 ttactaagtactagtgccgcaggag-agatttgaacccctgctgcccaagtgcttatc 64
>36029_cqu-mir-252:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 14 ttactaagtactagtgccgcaggagtacattcgacctcctgctgctcaagtgcttatc 71
||||||||||||||||||||||||| | ||| || | |||||||| ||||||||||||
Sbjct: 8 ttactaagtactagtgccgcaggag-agatttgaacccctgctgcccaagtgcttatc 64
>35376_ame-mir-252:mirbase
Length = 100
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 49 ctcctgctgctcaagtgcttatcaatggg 77
|||||||||||||||||||||||||||||
Sbjct: 67 ctcctgctgctcaagtgcttatcaatggg 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 taagtactagtgccgcaggagt 39
||||||||||||||||||||||
Sbjct: 17 taagtactagtgccgcaggagt 38
>37584_ngi-mir-252:mirbase
Length = 94
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 gtcctgttactaagtactagtgccgcaggagt 39
|||||||| |||||||||||||||||||||||
Sbjct: 7 gtcctgttcctaagtactagtgccgcaggagt 38
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 ctcctgctgctcaagtgcttatcaatgg 76
||||||||||||||||||||||||||||
Sbjct: 67 ctcctgctgctcaagtgcttatcaatgg 94
>37615_nlo-mir-252:mirbase
Length = 94
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 gtcctgttactaagtactagtgccgcaggagt 39
|||||||| |||||||||||||||||||||||
Sbjct: 7 gtcctgttcctaagtactagtgccgcaggagt 38
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 ctcctgctgctcaagtgcttatcaatgg 76
||||||||||||||||||||||||||||
Sbjct: 67 ctcctgctgctcaagtgcttatcaatgg 94
>37657_nvi-mir-252:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 gtcctgttactaagtactagtgccgcaggagt 39
|||||||| |||||||||||||||||||||||
Sbjct: 7 gtcctgttcctaagtactagtgccgcaggagt 38
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 49 ctcctgctgctcaagtgcttatcaatgg 76
||||||||||||||||||||||||||||
Sbjct: 67 ctcctgctgctcaagtgcttatcaatgg 94
>34892_sko-mir-252a:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tactaagtactagtgccgcaggagt 39
|||||||||||||||||||||||||
Sbjct: 19 tactaagtactagtgccgcaggagt 43
>35544_bmo-mir-252:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgttactaagtactagtgccgcaggag 38
|||| ||||||||||||||||||||||
Sbjct: 11 tgttcctaagtactagtgccgcaggag 37
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 49 ctcctgctgctcaagtgcttatcaatg 75
|||||||||| |||||||||||||||
Sbjct: 51 ctcctgctgcctaagtgcttatcaatg 77
>36403_dme-mir-252:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 16 ctaagtactagtgccgcaggagt 38
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 acctcctgctgctcaagtgcttat 70
|||||||||||| |||||||||||
Sbjct: 57 acctcctgctgcccaagtgcttat 80
>36404_dme-mir-252:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 16 ctaagtactagtgccgcaggagt 38
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 acctcctgctgctcaagtgcttat 70
|||||||||||| |||||||||||
Sbjct: 57 acctcctgctgcccaagtgcttat 80
>36943_dps-mir-252:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 21 ctaagtactagtgccgcaggagt 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 acctcctgctgctcaagtgcttat 70
|||||||||||| |||||||||||
Sbjct: 62 acctcctgctgcccaagtgcttat 85
>37229_dsi-mir-252:mirbase
Length = 116
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
|||||||||||||||||||||||
Sbjct: 30 ctaagtactagtgccgcaggagt 52
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 acctcctgctgctcaagtgcttat 70
|||||||||||| |||||||||||
Sbjct: 71 acctcctgctgcccaagtgcttat 94
>38768_cte-mir-252a:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggag 38
||||||||||||||||||||||
Sbjct: 21 ctaagtactagtgccgcaggag 42
>24700_bfl-mir-252a:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcagg 36
||||||||||||||||||||
Sbjct: 21 ctaagtactagtgccgcagg 40
>35071_api-mir-252a:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 49 ctcctgctgctcaagtgcttatca 72
||||||| ||||||||||||||||
Sbjct: 42 ctcctgcagctcaagtgcttatca 65
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 17 ctaagtactagtgccgcaggagt 39
||||||||||||||||| |||||
Sbjct: 1 ctaagtactagtgccgcgggagt 23
