miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37768_tca-mir-276:mirbase
Length = 71
Score = 141 bits (71), Expect = 7e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 tagaccactagcgaggtatagagttcctacgtgatttttcggctgtaggaacttcatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagaccactagcgaggtatagagttcctacgtgatttttcggctgtaggaacttcatacc 60
Query: 61 gtgctcttgga 71
|||||||||||
Sbjct: 61 gtgctcttgga 71
>35549_bmo-mir-276:mirbase
Length = 84
Score = 69.9 bits (35), Expect = 2e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 4 accactagcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtg 63
||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct: 10 accactagcgaggtatagagttcctacgt-atgctaacactgtaggaacttcataccgtg 68
Query: 64 ctcttgg 70
|||||||
Sbjct: 69 ctcttgg 75
>35076_api-mir-276:mirbase
Length = 77
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 3 gaccactagcgaggtatagagttcctacgt 32
||||||||||||||||||||||||||||||
Sbjct: 1 gaccactagcgaggtatagagttcctacgt 30
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 51 gtaggaacttcataccgtgctcttgga 77
>35380_ame-mir-276:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
||||||||||||||||||||||| | || | |||||||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgtagtgttcagaaagtaggaacttcataccgtgctcttg 75
Query: 70 ga 71
||
Sbjct: 76 ga 77
>36196_der-mir-276b:mirbase
Length = 93
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
||||||||||||||||||||||| | ||| | |||||||||| ||||||||||||||
Sbjct: 21 agcgaggtatagagttcctacgttcctattcagtcgtaggaacttaataccgtgctcttg 80
Query: 70 ga 71
||
Sbjct: 81 ga 82
>37156_dse-mir-276b:mirbase
Length = 93
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
||||||||||||||||||||||| | ||| | |||||||||| ||||||||||||||
Sbjct: 21 agcgaggtatagagttcctacgttcctattcagtcgtaggaacttaataccgtgctcttg 80
Query: 70 ga 71
||
Sbjct: 81 ga 82
>37234_dsi-mir-276b:mirbase
Length = 93
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
||||||||||||||||||||||| | ||| | |||||||||| ||||||||||||||
Sbjct: 21 agcgaggtatagagttcctacgttcctattcagtcgtaggaacttaataccgtgctcttg 80
Query: 70 ga 71
||
Sbjct: 81 ga 82
>37525_dya-mir-276b:mirbase
Length = 93
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
||||||||||||||||||||||| | ||| | |||||||||| ||||||||||||||
Sbjct: 21 agcgaggtatagagttcctacgttcctattcagtcgtaggaacttaataccgtgctcttg 80
Query: 70 ga 71
||
Sbjct: 81 ga 82
>37587_ngi-mir-276:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgtagatttcagaaagtaggaacttcataccgtgctcttg 75
Query: 70 ga 71
||
Sbjct: 76 ga 77
>37660_nvi-mir-276:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 2e-10
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgtagatttcagaaagtaggaacttcataccgtgctcttg 75
Query: 70 ga 71
||
Sbjct: 76 ga 77
>35300_aga-mir-276:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 tgtaggaacttcataccgtgctcttgga 71
||||||||||||||||||||||||||||
Sbjct: 53 tgtaggaacttcataccgtgctcttgga 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacg 31
||||||||||||||||||||||
Sbjct: 14 agcgaggtatagagttcctacg 35
>35301_aga-mir-276:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 44 tgtaggaacttcataccgtgctcttgga 71
||||||||||||||||||||||||||||
Sbjct: 53 tgtaggaacttcataccgtgctcttgga 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacg 31
||||||||||||||||||||||
Sbjct: 14 agcgaggtatagagttcctacg 35
>37618_nlo-mir-276:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 3e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtgatttttcggctgtaggaacttcataccgtgctcttg 69
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgtagatttcagaaagtaggaacttcataccgtgctcttg 75
>36117_dan-mir-276a:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 54 gtaggaacttcataccgtgctcttgga 80
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 16 agcgaggtatagagttcctacgt 38
>36195_der-mir-276a:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
>36413_dme-mir-276a:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
>36414_dme-mir-276a:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
>36792_dmo-mir-276a:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 55 gtaggaacttcataccgtgctcttgga 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39
>36869_dpe-mir-276a:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 55 gtaggaacttcataccgtgctcttgga 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39
>36948_dps-mir-276a:mirbase
Length = 99
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 55 gtaggaacttcataccgtgctcttgga 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39
>37155_dse-mir-276a:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
>37233_dsi-mir-276a:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
>37369_dvi-mir-276a:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 55 gtaggaacttcataccgtgctcttgga 81
>37448_dwi-mir-276a:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 55 gtaggaacttcataccgtgctcttgga 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39
>37524_dya-mir-276a:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||||||||||||||||||||
Sbjct: 53 gtaggaacttcataccgtgctcttgga 79
>35205_aae-mir-276-1:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgg 70
||||||||||||||||||||||||||
Sbjct: 56 gtaggaacttcataccgtgctcttgg 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39
>35206_aae-mir-276-2:mirbase
Length = 190
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 taggaacttcataccgtgctcttgga 71
||||||||||||||||||||||||||
Sbjct: 106 taggaacttcataccgtgctcttgga 131
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttccta 29
||||||||||||||||||||
Sbjct: 64 agcgaggtatagagttccta 83
>36032_cqu-mir-276-1:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 taggaacttcataccgtgctcttgga 71
||||||||||||||||||||||||||
Sbjct: 66 taggaacttcataccgtgctcttgga 91
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 ctagcgaggtatagagttccta 29
||||||||||||||||||||||
Sbjct: 20 ctagcgaggtatagagttccta 41
>36033_cqu-mir-276-2:mirbase
Length = 107
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgg 70
||||||||||||||||||||||||||
Sbjct: 62 gtaggaacttcataccgtgctcttgg 87
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 23 agcgaggtatagagttcctacgt 45
>36034_cqu-mir-276-3:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 taggaacttcataccgtgctcttgga 71
||||||||||||||||||||||||||
Sbjct: 66 taggaacttcataccgtgctcttgga 91
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 ccactagcgaggtatagagttccta 29
|||||||||||||||||||||||||
Sbjct: 17 ccactagcgaggtatagagttccta 41
>36284_dgr-mir-276a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 taggaacttcataccgtgctcttgga 71
||||||||||||||||||||||||||
Sbjct: 56 taggaacttcataccgtgctcttgga 81
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 17 agcgaggtatagagttcctacgt 39
>36285_dgr-mir-276b:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 accactagcgaggtatagagttcctacgtg 33
|||| |||||||||||||||||||||||||
Sbjct: 15 accattagcgaggtatagagttcctacgtg 44
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||| ||||||||||||||||
Sbjct: 60 gtaggaacttaataccgtgctcttgga 86
>35022_dpu-mir-276:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 ctagcgaggtatagagttcctacgt 32
|||||||||||||||||||||||||
Sbjct: 10 ctagcgaggtatagagttcctacgt 34
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctct 67
|||||||||||||||||||||||
Sbjct: 60 gtaggaacttcataccgtgctct 82
>37565_lmi-mir-276:mirbase
Length = 58
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tagcgaggtatagagttcctacgtg 33
|||||||||||||||||||||||||
Sbjct: 1 tagcgaggtatagagttcctacgtg 25
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctct 67
|||||||||||||||||||||||
Sbjct: 36 gtaggaacttcataccgtgctct 58
>36118_dan-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtg 33
||||||||||||||||||||||||
Sbjct: 21 agcgaggtatagagttcctacgtg 44
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||| ||||||||||||||||
Sbjct: 60 gtaggaacttaataccgtgctcttgga 86
>36793_dmo-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtg 33
||||||||||||||||||||||||
Sbjct: 21 agcgaggtatagagttcctacgtg 44
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||| ||||||||||||||||
Sbjct: 60 gtaggaacttaataccgtgctcttgga 86
>36870_dpe-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtg 33
||||||||||||||||||||||||
Sbjct: 22 agcgaggtatagagttcctacgtg 45
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||| ||||||||||||||||
Sbjct: 60 gtaggaacttaataccgtgctcttgga 86
>36949_dps-mir-276b:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtg 33
||||||||||||||||||||||||
Sbjct: 23 agcgaggtatagagttcctacgtg 46
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||| ||||||||||||||||
Sbjct: 61 gtaggaacttaataccgtgctcttgga 87
>37370_dvi-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtg 33
||||||||||||||||||||||||
Sbjct: 21 agcgaggtatagagttcctacgtg 44
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||| ||||||||||||||||
Sbjct: 60 gtaggaacttaataccgtgctcttgga 86
>37449_dwi-mir-276b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgtg 33
||||||||||||||||||||||||
Sbjct: 21 agcgaggtatagagttcctacgtg 44
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||| ||||||||||||||||
Sbjct: 60 gtaggaacttaataccgtgctcttgga 86
>36415_dme-mir-276b:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 24 agcgaggtatagagttcctacgt 46
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||| ||||||||||||||||
Sbjct: 61 gtaggaacttaataccgtgctcttgga 87
>36416_dme-mir-276b:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agcgaggtatagagttcctacgt 32
|||||||||||||||||||||||
Sbjct: 24 agcgaggtatagagttcctacgt 46
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 gtaggaacttcataccgtgctcttgga 71
|||||||||| ||||||||||||||||
Sbjct: 61 gtaggaacttaataccgtgctcttgga 87
