miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37773_tca-mir-279b:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 ggtagttatcctaaagtttttgatgggtgagggtttggtgcatgttttattttaatcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtagttatcctaaagtttttgatgggtgagggtttggtgcatgttttattttaatcatg 60
Query: 61 actagatccacactcatccaaaaatttggtgt 92
||||||||||||||||||||||||||||||||
Sbjct: 61 actagatccacactcatccaaaaatttggtgt 92
>38883_lgi-mir-279:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tcatgactagatccacactcatcca 80
|||||||||||||||||||||||||
Sbjct: 58 tcatgactagatccacactcatcca 82
>38773_cte-mir-279:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tcatgactagatccacactcatcca 80
|||||||||||||||||||||||||
Sbjct: 58 tcatgactagatccacactcatcca 82
>34982_isc-mir-279:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tcatgactagatccacactcatcca 80
|||||||||||||||||||||||||
Sbjct: 49 tcatgactagatccacactcatcca 73
>35024_dpu-mir-279:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tcatgactagatccacactcatcca 80
|||||||||||||||||||||||||
Sbjct: 57 tcatgactagatccacactcatcca 81
>35552_bmo-mir-279a:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 44/49 (89%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 32 ggtttggtgcatgttttattttaatcatgactagatccacactcatcca 80
||||| |||||||||| |||| | ||||||||||||||||||||||||
Sbjct: 26 ggtttagtgcatgttt-atttacaccatgactagatccacactcatcca 73
>35554_bmo-mir-279c:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 36 tggtgcatgttttattttaatcatgactagatccacactc 75
|||| |||||||||| || |||||||||||||||| ||||
Sbjct: 26 tggttcatgttttatattgatcatgactagatccatactc 65
>35079_api-mir-279a:mirbase
Length = 64
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 catgactagatccacactcatcc 79
|||||||||||||||||||||||
Sbjct: 42 catgactagatccacactcatcc 64
