miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37781_tca-mir-281:mirbase
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 tcgaaaatgaagagagctatccgtcgacagtatataatttacactgtcatggagttgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgaaaatgaagagagctatccgtcgacagtatataatttacactgtcatggagttgctc 60
Query: 61 tctttat 67
|||||||
Sbjct: 61 tctttat 67
>35557_bmo-mir-281:mirbase
Length = 77
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/64 (90%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 6 aatgaagagagctatccgtcgacagtat--ataatttacactgtcatggagttgctctct 63
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct: 7 aatgaagagagctatccgtcgacagtattgctgataaacactgtcatggagttgctctct 66
Query: 64 ttat 67
||||
Sbjct: 67 ttat 70
>35081_api-mir-281:mirbase
Length = 62
Score = 65.9 bits (33), Expect = 3e-12
Identities = 55/62 (88%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 10 aagagagctatccgtcgacagtatataattta----cactgtcatggagttgctctcttt 65
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 aagagagctatccgtcgacagtataatttttaactacactgtcatggagttgctctcttt 60
Query: 66 at 67
||
Sbjct: 61 at 62
>35305_aga-mir-281:mirbase
Length = 102
Score = 65.9 bits (33), Expect = 3e-12
Identities = 61/69 (88%), Gaps = 6/69 (8%)
Strand = Plus / Plus
Query: 3 gaaaatgaagagagctatccgtcgacagt----atataatttacactgtcatggagttgc 58
|||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct: 13 gaaaataaagagagctatccgtcgacagtagggatataatt--cactgtcatggaattgc 70
Query: 59 tctctttat 67
|||||||||
Sbjct: 71 tctctttat 79
>35386_ame-mir-281:mirbase
Length = 103
Score = 61.9 bits (31), Expect = 5e-11
Identities = 53/60 (88%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 10 aagagagctatccgtcgacagtat----ataatttacactgtcatggagttgctctcttt 65
||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 22 aagagagctatccatcgacagtatggttataatagacactgtcatggagttgctctcttt 81
>35210_aae-mir-281:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 8e-10
Identities = 60/69 (86%), Gaps = 6/69 (8%)
Strand = Plus / Plus
Query: 3 gaaaatgaagagagctatccgtcgacagt----atataatttacactgtcatggagttgc 58
|||||| |||||||||||||||||||||| |||| ||| |||||||||||| ||||
Sbjct: 14 gaaaataaagagagctatccgtcgacagtagggatatgatt--cactgtcatggaattgc 71
Query: 59 tctctttat 67
|||||||||
Sbjct: 72 tctctttat 80
>36038_cqu-mir-281:mirbase
Length = 107
Score = 58.0 bits (29), Expect = 8e-10
Identities = 60/69 (86%), Gaps = 6/69 (8%)
Strand = Plus / Plus
Query: 3 gaaaatgaagagagctatccgtcgacagt----atataatttacactgtcatggagttgc 58
|||||| |||||||||||||||||||||| |||| ||| |||||||||||| ||||
Sbjct: 19 gaaaataaagagagctatccgtcgacagtagggatatgatt--cactgtcatggaattgc 76
Query: 59 tctctttat 67
|||||||||
Sbjct: 77 tctctttat 85
>37566_lmi-mir-281:mirbase
Length = 58
Score = 58.0 bits (29), Expect = 8e-10
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 10 aagagagctatccgtcgacagtatataatttacactgtcatggagttgctctcttta 66
||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 1 aagagagctatccgtcgacagtacagtgagtaaactgtcatggagttgctctcttta 57
>36124_dan-mir-281-2:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 60 actgtcatggaattgctctcttt 82
>36202_der-mir-281-2:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>36291_dgr-mir-281-2:mirbase
Length = 93
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 59 actgtcatggaattgctctcttt 81
>36426_dme-mir-281-2:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>36427_dme-mir-281-2:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>36799_dmo-mir-281-2:mirbase
Length = 93
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 59 actgtcatggaattgctctcttt 81
>37162_dse-mir-281-2:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>37376_dvi-mir-281-2:mirbase
Length = 91
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 57 actgtcatggaattgctctcttt 79
>37455_dwi-mir-281-2:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 63 actgtcatggaattgctctcttt 85
>37531_dya-mir-281-2:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||||||||||||||||||||||||||
Sbjct: 10 aaatgaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 58 actgtcatggaattgctctcttt 80
>24703_bfl-mir-281:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 acactgtcatggagttgctctcttt 65
|||||||||||||||||||||||||
Sbjct: 55 acactgtcatggagttgctctcttt 79
>38884_lgi-mir-281:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttta 66
||||||||||||||||||||||||
Sbjct: 59 actgtcatggagttgctctcttta 82
>36876_dpe-mir-281-2:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||| ||||||||||||||||||||||
Sbjct: 10 aaataaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 57 actgtcatggaattgctctcttt 79
>36956_dps-mir-281-2:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 aaatgaagagagctatccgtcgacagt 31
|||| ||||||||||||||||||||||
Sbjct: 10 aaataaagagagctatccgtcgacagt 36
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 57 actgtcatggaattgctctcttt 79
>37589_ngi-mir-281:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 51/60 (85%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 10 aagagagctatccgtcgacagtat----ataatttacactgtcatggagttgctctcttt 65
||||||||||||| |||||||||| ||| | ||||||||||||| |||||||||||
Sbjct: 8 aagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgctctcttt 67
>37620_nlo-mir-281:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 51/60 (85%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 10 aagagagctatccgtcgacagtat----ataatttacactgtcatggagttgctctcttt 65
||||||||||||| |||||||||| ||| | ||||||||||||| |||||||||||
Sbjct: 8 aagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgctctcttt 67
>37663_nvi-mir-281:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 3e-06
Identities = 51/60 (85%), Gaps = 4/60 (6%)
Strand = Plus / Plus
Query: 10 aagagagctatccgtcgacagtat----ataatttacactgtcatggagttgctctcttt 65
||||||||||||| |||||||||| ||| | ||||||||||||| |||||||||||
Sbjct: 22 aagagagctatccatcgacagtatggtgatagatgacactgtcatggacttgctctcttt 81
>38774_cte-mir-281:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 tgtcatggagttgctctcttta 66
||||||||||||||||||||||
Sbjct: 62 tgtcatggagttgctctcttta 83
>24852_cin-mir-281:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctctt 64
||||||||||||||||||||||
Sbjct: 64 actgtcatggagttgctctctt 85
>35026_dpu-mir-281:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 cactgtcatggagttgctctctttat 67
||||||||||||| ||||||||||||
Sbjct: 58 cactgtcatggagctgctctctttat 83
>34895_sko-mir-281:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 ctgtcatggagttgctctctt 64
|||||||||||||||||||||
Sbjct: 60 ctgtcatggagttgctctctt 80
>36123_dan-mir-281-1:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 41 acactgtcatggagttgctctcttt 65
||||||||||||| |||||||||||
Sbjct: 50 acactgtcatggaattgctctcttt 74
>25337_csa-mir-281:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 44 ctgtcatggagttgctctct 63
||||||||||||||||||||
Sbjct: 65 ctgtcatggagttgctctct 84
>25536_pma-mir-281a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 tgtcatggagttgctctctt 64
||||||||||||||||||||
Sbjct: 55 tgtcatggagttgctctctt 74
>36201_der-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 cactgtcatggagttgctctcttt 65
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>36424_dme-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 cactgtcatggagttgctctcttt 65
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>36425_dme-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 cactgtcatggagttgctctcttt 65
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>37161_dse-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 cactgtcatggagttgctctcttt 65
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>37238_dsi-mir-281:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 cactgtcatggagttgctctcttt 65
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>37530_dya-mir-281-1:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 42 cactgtcatggagttgctctcttt 65
|||||||||||| |||||||||||
Sbjct: 55 cactgtcatggaattgctctcttt 78
>38122_bma-mir-281:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttta 66
||||||||||| ||||||||||||
Sbjct: 51 actgtcatggaattgctctcttta 74
>36290_dgr-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>36798_dmo-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>36875_dpe-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>36955_dps-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>37375_dvi-mir-281-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 54 actgtcatggaattgctctcttt 76
>37454_dwi-mir-281-1:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 43 actgtcatggagttgctctcttt 65
||||||||||| |||||||||||
Sbjct: 56 actgtcatggaattgctctcttt 78
