miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37789_tca-mir-305:mirbase
Length = 75
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 cacatgtctattgtacttcatcaggtgctctggtatactttttcccgacacctgttggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacatgtctattgtacttcatcaggtgctctggtatactttttcccgacacctgttggag 60
Query: 61 tgcactaattatgtg 75
|||||||||||||||
Sbjct: 61 tgcactaattatgtg 75
>35218_aae-mir-305:mirbase
Length = 88
Score = 67.9 bits (34), Expect = 9e-13
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 cacatgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||||
Sbjct: 6 cacatgtctattgtacttcatcaggtgctctggt 39
>35309_aga-mir-305:mirbase
Length = 90
Score = 67.9 bits (34), Expect = 9e-13
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 cacatgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||||
Sbjct: 6 cacatgtctattgtacttcatcaggtgctctggt 39
>36041_cqu-mir-305:mirbase
Length = 88
Score = 67.9 bits (34), Expect = 9e-13
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 cacatgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||||
Sbjct: 6 cacatgtctattgtacttcatcaggtgctctggt 39
>36134_dan-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>36212_der-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>36302_dgr-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>36445_dme-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>36446_dme-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>36808_dmo-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>36884_dpe-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>36966_dps-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>37172_dse-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>37385_dvi-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>37464_dwi-mir-305:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>37541_dya-mir-305:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||||||||||||||
Sbjct: 1 catgtctattgtacttcatcaggtgctctggt 32
>35389_ame-mir-305:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 attgtacttcatcaggtgctctggt 34
|||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggt 40
>35561_bmo-mir-305:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 attgtacttcatcaggtgctctggt 34
|||||||||||||||||||||||||
Sbjct: 17 attgtacttcatcaggtgctctggt 41
>37591_ngi-mir-305:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 attgtacttcatcaggtgctctggt 34
|||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggt 40
>37622_nlo-mir-305:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 attgtacttcatcaggtgctctggt 34
|||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggt 40
>37666_nvi-mir-305:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 attgtacttcatcaggtgctctggt 34
|||||||||||||||||||||||||
Sbjct: 16 attgtacttcatcaggtgctctggt 40
>34984_isc-mir-305:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 attgtacttcatcaggtgctctgg 33
||||||||||||||||||||||||
Sbjct: 14 attgtacttcatcaggtgctctgg 37
>37249_dsi-mir-305:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 9e-07
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 3 catgtctattgtacttcatcaggtgctctggt 34
||||||||||||||||||||| ||||||||||
Sbjct: 1 catgtctattgtacttcatca-gtgctctggt 31
