miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37790_tca-mir-307:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ggtgactcactcaacctgggtgtgatgtgtttgctgtaccatcacaacctccttgagtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgactcactcaacctgggtgtgatgtgtttgctgtaccatcacaacctccttgagtga 60
Query: 61 gcgaccgg 68
||||||||
Sbjct: 61 gcgaccgg 68
>35311_aga-mir-307:mirbase
Length = 98
Score = 69.9 bits (35), Expect = 2e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 5 actcactcaacctgggtgtgatgtgtttgctgtaccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||
Sbjct: 20 actcactcaacctgggtgtgatgcttttt-tgaatcatcacaacctccttgagtgagcga 78
Query: 65 ccg 67
|||
Sbjct: 79 ccg 81
>35220_aae-mir-307:mirbase
Length = 91
Score = 61.9 bits (31), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 5 actcactcaacctgggtgtgatgtgtttgctgtaccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||| | | || | |||||||||||||||||||||||||
Sbjct: 22 actcactcaacctgggtgtgatgcttatt-tgaatcatcacaacctccttgagtgagcga 80
Query: 65 ccg 67
|||
Sbjct: 81 ccg 83
>37387_dvi-mir-307:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 1e-08
Identities = 60/68 (88%), Gaps = 6/68 (8%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt--gtttgct---gta-ccatcacaacctccttga 56
|||||||||||||||||||||||||| ||| | | ||| ||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgttagttcgatttggtatccatcacaacctccttga 70
Query: 57 gtgagcga 64
||||||||
Sbjct: 71 gtgagcga 78
>35564_bmo-mir-307:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 5 actcactcaacctgggtgtgatgtgt 30
||||||||||||||||||||||||||
Sbjct: 16 actcactcaacctgggtgtgatgtgt 41
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 58 ccatcacaacctccttgagtgagcga 83
>36136_dan-mir-307:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>36214_der-mir-307:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>36304_dgr-mir-307:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>36449_dme-mir-307a:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>36450_dme-mir-307a:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>36451_dme-mir-307b:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 28
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 95 tgactcactcaacctgggtgtgatgt 70
>36452_dme-mir-307b:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 28
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 95 tgactcactcaacctgggtgtgatgt 70
>36810_dmo-mir-307:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>36886_dpe-mir-307:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>36968_dps-mir-307a:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>36969_dps-mir-307b:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 34 ccatcacaacctccttgagtgagcga 9
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 76 tgactcactcaacctgggtgtgatgt 51
>37174_dse-mir-307:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>37250_dsi-mir-307:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>37467_dwi-mir-307:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 10 tgactcactcaacctgggtgtgatgt 35
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>37543_dya-mir-307:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 3 tgactcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||||
Sbjct: 11 tgactcactcaacctgggtgtgatgt 36
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgagcga 64
||||||||||||||||||||||||||
Sbjct: 53 ccatcacaacctccttgagtgagcga 78
>35391_ame-mir-307:mirbase
Length = 133
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 4 gactcactcaacctgggtgtgatg 27
||||||||||||||||||||||||
Sbjct: 31 gactcactcaacctgggtgtgatg 54
>37567_lmi-mir-307:mirbase
Length = 61
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 actcactcaacctgggtgtgatgt 28
||||||||||||||||||||||||
Sbjct: 1 actcactcaacctgggtgtgatgt 24
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tcacaacctccttgagtgagcga 64
|||||||||||||||||||||||
Sbjct: 39 tcacaacctccttgagtgagcga 61
>34985_isc-mir-307:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 ccatcacaacctccttgagtgag 61
|||||||||||||||||||||||
Sbjct: 58 ccatcacaacctccttgagtgag 80
>37667_nvi-mir-307:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 actcactcaacctgggtgtgatg 27
|||||||||||||||||||||||
Sbjct: 20 actcactcaacctgggtgtgatg 42
>35083_api-mir-307-1:mirbase
Length = 61
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 cacaacctccttgagtgagcga 64
||||||||||||||||||||||
Sbjct: 40 cacaacctccttgagtgagcga 61
>35084_api-mir-307-2:mirbase
Length = 61
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 cacaacctccttgagtgagcga 64
||||||||||||||||||||||
Sbjct: 40 cacaacctccttgagtgagcga 61
>35030_dpu-mir-307:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tcacaacctccttgagtgag 61
||||||||||||||||||||
Sbjct: 61 tcacaacctccttgagtgag 80
