miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37808_tca-mir-927:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 tttcggtttagaattcctacgctttaccgtgtgaaaggctggcaaagcgtttggattctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcggtttagaattcctacgctttaccgtgtgaaaggctggcaaagcgtttggattctg 60
Query: 61 aatcgaac 68
||||||||
Sbjct: 61 aatcgaac 68
>35230_aae-mir-927:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 3e-09
Identities = 57/67 (85%), Gaps = 6/67 (8%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgtg------tgaaaggctggcaaagcgtttggattctg 60
||||||||||||||||||||||||| |||||| ||||||||||||||| |||||
Sbjct: 8 tttagaattcctacgctttaccgtgatttgttgaaagtttggcaaagcgtttgggttctg 67
Query: 61 aatcgaa 67
|| ||||
Sbjct: 68 aaacgaa 74
>36477_dme-mir-927:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgtg 31
|||||||||||||||||||||||||
Sbjct: 16 tttagaattcctacgctttaccgtg 40
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattctgaa 62
||||||||||||||||||||||
Sbjct: 54 ggcaaagcgtttggattctgaa 75
>36478_dme-mir-927:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgtg 31
|||||||||||||||||||||||||
Sbjct: 16 tttagaattcctacgctttaccgtg 40
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattctgaa 62
||||||||||||||||||||||
Sbjct: 54 ggcaaagcgtttggattctgaa 75
>37263_dsi-mir-927:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgtg 31
|||||||||||||||||||||||||
Sbjct: 17 tttagaattcctacgctttaccgtg 41
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattctgaa 62
||||||||||||||||||||||
Sbjct: 55 ggcaaagcgtttggattctgaa 76
>35088_api-mir-927:mirbase
Length = 59
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 1 tttagaattcctacgctttaccgt 24
>35571_bmo-mir-927:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 15 tttagaattcctacgctttaccgt 38
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattct 59
|||||||||||||||||||
Sbjct: 52 ggcaaagcgtttggattct 70
>35585_bmo-mir-1926:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 75 tttagaattcctacgctttaccgt 52
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 41 ggcaaagcgtttggattct 59
|||||||||||||||||||
Sbjct: 38 ggcaaagcgtttggattct 20
>36979_dps-mir-927:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccgt 30
||||||||||||||||||||||||
Sbjct: 15 tttagaattcctacgctttaccgt 38
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattctgaa 62
||||||||||||||||||||||
Sbjct: 54 ggcaaagcgtttggattctgaa 75
>35318_aga-mir-927:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 ggcaaagcgtttggattctgaatcgaa 67
|||||||||||||||||||||| ||||
Sbjct: 55 ggcaaagcgtttggattctgaaacgaa 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttacc 28
||||||||||||||||||||||
Sbjct: 16 tttagaattcctacgctttacc 37
>35398_ame-mir-927:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccg 29
|||||||||||||||||||||||
Sbjct: 22 tttagaattcctacgctttaccg 44
>37594_ngi-mir-927:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccg 29
|||||||||||||||||||||||
Sbjct: 22 tttagaattcctacgctttaccg 44
>37624_nlo-mir-927:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccg 29
|||||||||||||||||||||||
Sbjct: 22 tttagaattcctacgctttaccg 44
>37671_nvi-mir-927:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 tttagaattcctacgctttaccg 29
|||||||||||||||||||||||
Sbjct: 22 tttagaattcctacgctttaccg 44
