miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37822_tca-mir-993:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 ggcacatccgtgatctaccctgtagatccgggcttttgtagaatttttagatcagaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcacatccgtgatctaccctgtagatccgggcttttgtagaatttttagatcagaagct 60
Query: 61 cgtctctacaggtatcttacggatggaa 88
||||||||||||||||||||||||||||
Sbjct: 61 cgtctctacaggtatcttacggatggaa 88
>35409_ame-mir-993:mirbase
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ggcacatccgtgatctaccctgtagatccgggcttttgtagaatt-tttagatcagaagc 59
||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 1 ggcacattcgtgatctaccctgtagatccgggcttttgtagaattgtaaatatcagaagc 60
Query: 60 tcgtctctacaggtatcttacggatg 85
||||||||||||||||||||||||||
Sbjct: 61 tcgtctctacaggtatcttacggatg 86
>37675_nvi-mir-993:mirbase
Length = 119
Score = 123 bits (62), Expect = 2e-29
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 ggcacatccgtgatctaccctgtagatccgggcttttgtagaatt-tttagatcagaagc 59
||||||| ||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 30 ggcacattcgtgatctaccctgtagatccgggcttttgtagaattgtagatatcagaagc 89
Query: 60 tcgtctctacaggtatcttacggatg 85
||||||||||||||||||||||||||
Sbjct: 90 tcgtctctacaggtatcttacggatg 115
>35578_bmo-mir-993a:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 1 ggcacatccgtgatctaccctgtagatccgggcttttgtagaatttttagatcagaagct 60
||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 1 ggcacattcgtgatctaccctgtagatccgggcttttgtagattaattacatcagaagct 60
Query: 61 cgtctctacaggtatcttacggatggaa 88
||||||||||||||||| |||| |||||
Sbjct: 61 cgtctctacaggtatctcacggctggaa 88
>35094_api-mir-993:mirbase
Length = 88
Score = 107 bits (54), Expect = 1e-24
Identities = 81/88 (92%), Gaps = 4/88 (4%)
Strand = Plus / Plus
Query: 5 catccgtgatctaccctgtagatccgggcttttgtagaatttt---ta-gatcagaagct 60
|||||||||||||||||||||||||||||||||||||||| | || | |||||||||
Sbjct: 1 catccgtgatctaccctgtagatccgggcttttgtagaataatcgatatgttcagaagct 60
Query: 61 cgtctctacaggtatcttacggatggaa 88
||||||||||||||||||||||||||||
Sbjct: 61 cgtctctacaggtatcttacggatggaa 88
>37597_ngi-mir-993:mirbase
Length = 85
Score = 105 bits (53), Expect = 5e-24
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 9 cgtgatctaccctgtagatccgggcttttgtagaatttttagatcagaagctcgtctcta 68
|||||||||||||||||||||||||||| ||||||| | | ||||||||||||||||||
Sbjct: 7 cgtgatctaccctgtagatccgggcttt-gtagaatgtagatatcagaagctcgtctcta 65
Query: 69 caggtatcttacggatg 85
|||||||||||||||||
Sbjct: 66 caggtatcttacggatg 82
>37627_nlo-mir-993:mirbase
Length = 89
Score = 97.6 bits (49), Expect = 1e-21
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 10 gtgatctaccctgtagatccgggcttttgtagaat-ttttagatcagaagctcgtctcta 68
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 10 gtgatctaccctgtagatccgggcttttgtagaatagtagatatcagaagctcgtctcta 69
Query: 69 caggtatcttacggatg 85
|||||||||| ||||||
Sbjct: 70 caggtatctttcggatg 86
>35579_bmo-mir-993b:mirbase
Length = 119
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 ggcacatccgtgatctaccctgtagatccgggcttt 36
||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ggcacattcgtgatctaccctgtagatccgggcttt 36
>35037_dpu-mir-993:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 51 atcagaagctcgtctctacaggtatcttacgg 82
||||||||||||| ||||||||||||||||||
Sbjct: 57 atcagaagctcgtttctacaggtatcttacgg 88
>36563_dme-mir-993:mirbase
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 atcagaagctcgtctctacaggtatct 77
|||||||||||||||||||||||||||
Sbjct: 81 atcagaagctcgtctctacaggtatct 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 ccgtgatctaccctgtagatccgggcttttgt 39
|||||| ||||||||||| |||||||||||||
Sbjct: 8 ccgtgacctaccctgtagttccgggcttttgt 39
>36564_dme-mir-993:mirbase
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 atcagaagctcgtctctacaggtatct 77
|||||||||||||||||||||||||||
Sbjct: 81 atcagaagctcgtctctacaggtatct 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 ccgtgatctaccctgtagatccgggcttttgt 39
|||||| ||||||||||| |||||||||||||
Sbjct: 8 ccgtgacctaccctgtagttccgggcttttgt 39
>36997_dps-mir-993:mirbase
Length = 114
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 atcagaagctcgtctctacaggtatct 77
|||||||||||||||||||||||||||
Sbjct: 77 atcagaagctcgtctctacaggtatct 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 ccgtgatctaccctgtagatccgggcttttgt 39
|||||| ||||||||||| |||||||||||||
Sbjct: 4 ccgtgacctaccctgtagttccgggcttttgt 35
>37298_dsi-mir-993:mirbase
Length = 114
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 atcagaagctcgtctctacaggtatct 77
|||||||||||||||||||||||||||
Sbjct: 77 atcagaagctcgtctctacaggtatct 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 ccgtgatctaccctgtagatccgggcttttgt 39
|||||| ||||||||||| |||||||||||||
Sbjct: 4 ccgtgacctaccctgtagttccgggcttttgt 35
>34990_isc-mir-993:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 atctaccctgtagatccgggcttttgtaga 42
|||||||||||||| |||||||||||||||
Sbjct: 16 atctaccctgtagaaccgggcttttgtaga 45
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 tcagaagctcgtctctacaggtatctt 78
|||||||||||| ||||||||||||||
Sbjct: 58 tcagaagctcgtttctacaggtatctt 84
>35241_aae-mir-993:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 tccgtgatctaccctgtagatccgggcttttgt 39
||||||| ||||||||||| |||||||||||||
Sbjct: 9 tccgtgacctaccctgtagttccgggcttttgt 41
>35327_aga-mir-993:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 tccgtgatctaccctgtagatccgggcttttgt 39
||||||| ||||||||||| |||||||||||||
Sbjct: 9 tccgtgacctaccctgtagttccgggcttttgt 41
>36057_cqu-mir-993:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 tccgtgatctaccctgtagatccgggcttttgt 39
||||||| ||||||||||| |||||||||||||
Sbjct: 9 tccgtgacctaccctgtagttccgggcttttgt 41
