miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37872_tca-mir-3811a:mirbase
Length = 97
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
Query: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
>37876_tca-mir-3811c-1:mirbase
Length = 97
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaata 60
Query: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
||||||||||||||||||||||||| |||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctggaggttggtcagt 97
>37877_tca-mir-3811c-1:mirbase
Length = 97
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaata 60
Query: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
||||||||||||||||||||||||| |||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctggaggttggtcagt 97
>37878_tca-mir-3811c-2:mirbase
Length = 97
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaata 60
Query: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
||||||||||||||||||||||||| |||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctggaggttggtcagt 97
>37879_tca-mir-3811c-2:mirbase
Length = 97
Score = 168 bits (85), Expect = 5e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaata 60
Query: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
||||||||||||||||||||||||| |||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctggaggttggtcagt 97
>37880_tca-mir-3811d:mirbase
Length = 104
Score = 145 bits (73), Expect = 7e-36
Identities = 89/93 (95%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||
Sbjct: 5 tttatccaattctcaggattctt-ctcagggtttacatgttttggtctaaatatgaaata 63
Query: 61 tgtacaaccgtgagtggagacctgggggttggt 93
|||||||||||||||||||||||||||||||||
Sbjct: 64 tgtacaaccgtgagtggagacctgggggttggt 96
>37881_tca-mir-3811d:mirbase
Length = 104
Score = 145 bits (73), Expect = 7e-36
Identities = 89/93 (95%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||||
Sbjct: 5 tttatccaattctcaggattctt-ctcagggtttacatgttttggtctaaatatgaaata 63
Query: 61 tgtacaaccgtgagtggagacctgggggttggt 93
|||||||||||||||||||||||||||||||||
Sbjct: 64 tgtacaaccgtgagtggagacctgggggttggt 96
>37874_tca-mir-3811b:mirbase
Length = 86
Score = 101 bits (51), Expect = 9e-23
Identities = 84/97 (86%), Gaps = 11/97 (11%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttac-----------taaatatgaaata 49
Query: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
|||||||||||||||||||||||| ||||||||||||
Sbjct: 50 tgtacaaccgtgagtggagacctgagggttggtcagt 86
>37875_tca-mir-3811b:mirbase
Length = 86
Score = 101 bits (51), Expect = 9e-23
Identities = 84/97 (86%), Gaps = 11/97 (11%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttac-----------taaatatgaaata 49
Query: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
|||||||||||||||||||||||| ||||||||||||
Sbjct: 50 tgtacaaccgtgagtggagacctgagggttggtcagt 86
>37882_tca-mir-3811e:mirbase
Length = 112
Score = 67.9 bits (34), Expect = 1e-12
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 8 aattctcaggattcttgctcagagtttacatattttggtttaaatatgaaatatgtacaa 67
|||||||||||||||| || || ||||| ||||||| | |||| ||||||||||||
Sbjct: 15 aattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaatatgtacaa 74
Query: 68 ccgtgagtggagacctgggggttggt 93
||||||||||||| ||||||||||||
Sbjct: 75 ccgtgagtggaga-ctgggggttggt 99
>37883_tca-mir-3811e:mirbase
Length = 112
Score = 67.9 bits (34), Expect = 1e-12
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 8 aattctcaggattcttgctcagagtttacatattttggtttaaatatgaaatatgtacaa 67
|||||||||||||||| || || ||||| ||||||| | |||| ||||||||||||
Sbjct: 15 aattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaatatgtacaa 74
Query: 68 ccgtgagtggagacctgggggttggt 93
||||||||||||| ||||||||||||
Sbjct: 75 ccgtgagtggaga-ctgggggttggt 99
