miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37875_tca-mir-3811b:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagggtttactaaatatgaaatatgtacaaccgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttactaaatatgaaatatgtacaaccgt 60
Query: 61 gagtggagacctgagggttggtcagt 86
||||||||||||||||||||||||||
Sbjct: 61 gagtggagacctgagggttggtcagt 86
>37872_tca-mir-3811a:mirbase
Length = 97
Score = 101 bits (51), Expect = 8e-23
Identities = 84/97 (86%), Gaps = 11/97 (11%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagggtttac-----------taaatatgaaata 49
||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
Query: 50 tgtacaaccgtgagtggagacctgagggttggtcagt 86
|||||||||||||||||||||||| ||||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
>37873_tca-mir-3811a:mirbase
Length = 97
Score = 101 bits (51), Expect = 8e-23
Identities = 84/97 (86%), Gaps = 11/97 (11%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagggtttac-----------taaatatgaaata 49
||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagagtttacatattttggtttaaatatgaaata 60
Query: 50 tgtacaaccgtgagtggagacctgagggttggtcagt 86
|||||||||||||||||||||||| ||||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctgggggttggtcagt 97
>37876_tca-mir-3811c-1:mirbase
Length = 97
Score = 101 bits (51), Expect = 8e-23
Identities = 84/97 (86%), Gaps = 11/97 (11%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagggtttac-----------taaatatgaaata 49
|||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaata 60
Query: 50 tgtacaaccgtgagtggagacctgagggttggtcagt 86
|||||||||||||||||||||||| |||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctggaggttggtcagt 97
>37877_tca-mir-3811c-1:mirbase
Length = 97
Score = 101 bits (51), Expect = 8e-23
Identities = 84/97 (86%), Gaps = 11/97 (11%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagggtttac-----------taaatatgaaata 49
|||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaata 60
Query: 50 tgtacaaccgtgagtggagacctgagggttggtcagt 86
|||||||||||||||||||||||| |||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctggaggttggtcagt 97
>37878_tca-mir-3811c-2:mirbase
Length = 97
Score = 101 bits (51), Expect = 8e-23
Identities = 84/97 (86%), Gaps = 11/97 (11%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagggtttac-----------taaatatgaaata 49
|||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaata 60
Query: 50 tgtacaaccgtgagtggagacctgagggttggtcagt 86
|||||||||||||||||||||||| |||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctggaggttggtcagt 97
>37879_tca-mir-3811c-2:mirbase
Length = 97
Score = 101 bits (51), Expect = 8e-23
Identities = 84/97 (86%), Gaps = 11/97 (11%)
Strand = Plus / Plus
Query: 1 tttatccaattctcaggattcttgctcagggtttac-----------taaatatgaaata 49
|||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tttatccaattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaata 60
Query: 50 tgtacaaccgtgagtggagacctgagggttggtcagt 86
|||||||||||||||||||||||| |||||||||||
Sbjct: 61 tgtacaaccgtgagtggagacctggaggttggtcagt 97
>37880_tca-mir-3811d:mirbase
Length = 104
Score = 85.7 bits (43), Expect = 5e-18
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 36 ctaaatatgaaatatgtacaaccgtgagtggagacctgagggttggt 82
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 50 ctaaatatgaaatatgtacaaccgtgagtggagacctgggggttggt 96
>37881_tca-mir-3811d:mirbase
Length = 104
Score = 85.7 bits (43), Expect = 5e-18
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 36 ctaaatatgaaatatgtacaaccgtgagtggagacctgagggttggt 82
|||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 50 ctaaatatgaaatatgtacaaccgtgagtggagacctgggggttggt 96
>37882_tca-mir-3811e:mirbase
Length = 112
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 aaatatgtacaaccgtgagtggagac 70
||||||||||||||||||||||||||
Sbjct: 63 aaatatgtacaaccgtgagtggagac 88
>37883_tca-mir-3811e:mirbase
Length = 112
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 aaatatgtacaaccgtgagtggagac 70
||||||||||||||||||||||||||
Sbjct: 63 aaatatgtacaaccgtgagtggagac 88
