miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37882_tca-mir-3811e:mirbase
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 atacggttttaactaattctcaggattcttacttgcggtgtacatgttttggtatgaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atacggttttaactaattctcaggattcttacttgcggtgtacatgttttggtatgaata 60
Query: 61 gtaaatatgtacaaccgtgagtggagactgggggttggttagtcaacagctt 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtaaatatgtacaaccgtgagtggagactgggggttggttagtcaacagctt 112
>37880_tca-mir-3811d:mirbase
Length = 104
Score = 93.7 bits (47), Expect = 3e-20
Identities = 91/103 (88%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 6 gttttaactaattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaa 65
|||||| | |||||||||||||||| || ||| ||||||||||||| | |||| |||
Sbjct: 3 gttttatccaattctcaggattctt-ctcagggtttacatgttttggtctaaatatgaaa 61
Query: 66 tatgtacaaccgtgagtggaga-ctgggggttggttagtcaac 107
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 62 tatgtacaaccgtgagtggagacctgggggttggttagtcaac 104
>37881_tca-mir-3811d:mirbase
Length = 104
Score = 93.7 bits (47), Expect = 3e-20
Identities = 91/103 (88%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 6 gttttaactaattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaa 65
|||||| | |||||||||||||||| || ||| ||||||||||||| | |||| |||
Sbjct: 3 gttttatccaattctcaggattctt-ctcagggtttacatgttttggtctaaatatgaaa 61
Query: 66 tatgtacaaccgtgagtggaga-ctgggggttggttagtcaac 107
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 62 tatgtacaaccgtgagtggagacctgggggttggttagtcaac 104
>37876_tca-mir-3811c-1:mirbase
Length = 97
Score = 75.8 bits (38), Expect = 6e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 15 aattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaatatgtacaa 74
|||||||||||||||| || ||| ||||||||||||| | |||| ||||||||||||
Sbjct: 8 aattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaatatgtacaa 67
Query: 75 ccgtgagtggagac 88
||||||||||||||
Sbjct: 68 ccgtgagtggagac 81
>37877_tca-mir-3811c-1:mirbase
Length = 97
Score = 75.8 bits (38), Expect = 6e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 15 aattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaatatgtacaa 74
|||||||||||||||| || ||| ||||||||||||| | |||| ||||||||||||
Sbjct: 8 aattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaatatgtacaa 67
Query: 75 ccgtgagtggagac 88
||||||||||||||
Sbjct: 68 ccgtgagtggagac 81
>37878_tca-mir-3811c-2:mirbase
Length = 97
Score = 75.8 bits (38), Expect = 6e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 15 aattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaatatgtacaa 74
|||||||||||||||| || ||| ||||||||||||| | |||| ||||||||||||
Sbjct: 8 aattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaatatgtacaa 67
Query: 75 ccgtgagtggagac 88
||||||||||||||
Sbjct: 68 ccgtgagtggagac 81
>37879_tca-mir-3811c-2:mirbase
Length = 97
Score = 75.8 bits (38), Expect = 6e-15
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 15 aattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaatatgtacaa 74
|||||||||||||||| || ||| ||||||||||||| | |||| ||||||||||||
Sbjct: 8 aattctcaggattcttgctcagggtttacatgttttggtttaaatatgaaatatgtacaa 67
Query: 75 ccgtgagtggagac 88
||||||||||||||
Sbjct: 68 ccgtgagtggagac 81
>37872_tca-mir-3811a:mirbase
Length = 97
Score = 67.9 bits (34), Expect = 1e-12
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 15 aattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaatatgtacaa 74
|||||||||||||||| || || ||||| ||||||| | |||| ||||||||||||
Sbjct: 8 aattctcaggattcttgctcagagtttacatattttggtttaaatatgaaatatgtacaa 67
Query: 75 ccgtgagtggaga-ctgggggttggt 99
||||||||||||| ||||||||||||
Sbjct: 68 ccgtgagtggagacctgggggttggt 93
>37873_tca-mir-3811a:mirbase
Length = 97
Score = 67.9 bits (34), Expect = 1e-12
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 15 aattctcaggattcttacttgcggtgtacatgttttggtatgaatagtaaatatgtacaa 74
|||||||||||||||| || || ||||| ||||||| | |||| ||||||||||||
Sbjct: 8 aattctcaggattcttgctcagagtttacatattttggtttaaatatgaaatatgtacaa 67
Query: 75 ccgtgagtggaga-ctgggggttggt 99
||||||||||||| ||||||||||||
Sbjct: 68 ccgtgagtggagacctgggggttggt 93
>37874_tca-mir-3811b:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 aaatatgtacaaccgtgagtggagac 88
||||||||||||||||||||||||||
Sbjct: 45 aaatatgtacaaccgtgagtggagac 70
>37875_tca-mir-3811b:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 aaatatgtacaaccgtgagtggagac 88
||||||||||||||||||||||||||
Sbjct: 45 aaatatgtacaaccgtgagtggagac 70
