miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38560_crm-mir-236:mirbase
          Length = 108

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 atctaatactgtcaggtaatgacg 71
          ||||||||||||||||||||||||
Sbjct: 62 atctaatactgtcaggtaatgacg 85

>38339_cel-mir-236:mirbase
          Length = 98

 Score = 48.1 bits (24), Expect = 9e-07
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 48 atctaatactgtcaggtaatgacg 71
          ||||||||||||||||||||||||
Sbjct: 58 atctaatactgtcaggtaatgacg 81

>38211_cbr-mir-236:mirbase
          Length = 100

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 49 tctaatactgtcaggtaatgacg 71
          |||||||||||||||||||||||
Sbjct: 59 tctaatactgtcaggtaatgacg 81

>35047_api-mir-8:mirbase
          Length = 63

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                    
Query: 28 attagagtgtcatatgaaatatctaatactgtcaggtaatga 69
          ||||||||| ||  ||| || |||||||||||||||||||||
Sbjct: 18 attagagtgacaattgatatgtctaatactgtcaggtaatga 59

>39065_sme-mir-8a:mirbase
          Length = 70

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 48 atctaatactgtcaggtaa 66
          |||||||||||||||||||
Sbjct: 42 atctaatactgtcaggtaa 60

>38632_ppc-mir-236:mirbase
          Length = 115

 Score = 38.2 bits (19), Expect = 9e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 48 atctaatactgtcaggtaatgac 70
          |||||||||||||| ||||||||
Sbjct: 75 atctaatactgtcatgtaatgac 97