miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38282_cel-mir-45:mirbase
Length = 96
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 caccatgtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccatgtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggacta 60
Query: 61 tgactagagacacattcagcttggcgccgaatgcat 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgactagagacacattcagcttggcgccgaatgcat 96
>38508_crm-mir-45:mirbase
Length = 109
Score = 97.6 bits (49), Expect = 1e-21
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 7 gtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactatgacta 66
||||||||||||||||||||||||||||||||| ||| || || |||| ||||||||
Sbjct: 15 gtgccacgctggatgtgctcgttagtcataataacct-catttagtaaggcttatgacta 73
Query: 67 gagacacattcagcttggcgccgaa 91
|||||||||||||||||||||||||
Sbjct: 74 gagacacattcagcttggcgccgaa 98
>38155_cbr-mir-45-1:mirbase
Length = 82
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 7 gtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactatgacta 66
|||||||||||||||||||||||||||||| || |||| ||| | ||| ||||||||
Sbjct: 2 gtgccacgctggatgtgctcgttagtcatagtaacctcatcaattc-aggcttatgacta 60
Query: 67 gagacacattcagcttggcgcc 88
||||||||||||||||||||||
Sbjct: 61 gagacacattcagcttggcgcc 82
>38156_cbr-mir-45-2:mirbase
Length = 82
Score = 75.8 bits (38), Expect = 5e-15
Identities = 72/82 (87%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 7 gtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactatgacta 66
||||||||||||||||| |||||||||||| || |||| ||| || || ||||||||
Sbjct: 2 gtgccacgctggatgtgttcgttagtcatagtaacctcatcaattca-ggcttatgacta 60
Query: 67 gagacacattcagcttggcgcc 88
||||||||||||||||||||||
Sbjct: 61 gagacacattcagcttggcgcc 82
>38602_ppc-mir-45:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggcgccg 89
|||||||||||||||||||||||||| ||||
Sbjct: 61 tatgactagagacacattcagcttggggccg 91
>38507_crm-mir-44:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 61 tatgactagagacacattcagcttggc 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ctggatgtgctcgttagtcata 36
||||||||||||||||||||||
Sbjct: 17 ctggatgtgctcgttagtcata 38
>38154_cbr-mir-44:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggc 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ctggatgtgctcgttagtcata 36
||||||||||||||||||||||
Sbjct: 14 ctggatgtgctcgttagtcata 35
>38279_cel-mir-44:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggc 85
>38280_cel-mir-44:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tatgactagagacacattcagcttggc 85
|||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggc 85
