miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38157_cbr-mir-46:mirbase
Length = 94
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 56 tgtgctgtcatggagtcgctctcttcagatgatc 89
||||||||||||||||||||||||||||||||||
Sbjct: 53 tgtgctgtcatggagtcgctctcttcagatgatc 86
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 6 gtgaagctgaagagagccgtctattgacagttc 38
|||||||||||||||||||||||||||||||||
Sbjct: 10 gtgaagctgaagagagccgtctattgacagttc 42
>38509_crm-mir-46:mirbase
Length = 108
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 3 gaggtgaagctgaagagagccgtctattgacagttc 38
||||| ||||||||||||||||||||||||||||||
Sbjct: 14 gaggtaaagctgaagagagccgtctattgacagttc 49
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 60 ctgtcatggagtcgctctcttcagatgatcc 90
|||||||||||||||||||||||||||||||
Sbjct: 67 ctgtcatggagtcgctctcttcagatgatcc 97
>38284_cel-mir-47:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 ctgtcatggagtcgctctcttcagatgat 88
||||||||||| |||||||||||||||||
Sbjct: 60 ctgtcatggaggcgctctcttcagatgat 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 tgaagctgaagagagccgtctattgacagt 36
|||| ||||||||||| |||||||||||||
Sbjct: 11 tgaaactgaagagagcagtctattgacagt 40
>38603_ppc-mir-46:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tgtcatggagtcgctctcttcag 83
|||||||||||||||||||||||
Sbjct: 71 tgtcatggagtcgctctcttcag 93
>38510_crm-mir-47:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 60 ctgtcatggagtcgctctcttcagatgatc 89
||||||||||| |||||||||||| |||||
Sbjct: 61 ctgtcatggaggcgctctcttcaggtgatc 90
>38158_cbr-mir-47:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 60 ctgtcatggagtcgctctcttcag 83
||||||||||| ||||||||||||
Sbjct: 56 ctgtcatggaggcgctctcttcag 79
