miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38513_crm-mir-50:mirbase
          Length = 96

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 10 ggccgctgatatgtctggtattcttgggtt 39
          ||||||||||||||||||||||||||||||
Sbjct: 11 ggccgctgatatgtctggtattcttgggtt 40

>38161_cbr-mir-50:mirbase
          Length = 101

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 8  ccggccgctgatatgtctggtattcttgggtt 39
          ||||||||||||||||||| ||||||||||||
Sbjct: 10 ccggccgctgatatgtctgatattcttgggtt 41



 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 64 tattagacgtatcgacggccggc 86
          |||||||||||||||||||||||
Sbjct: 69 tattagacgtatcgacggccggc 91

>38103_bma-mir-50:mirbase
          Length = 91

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 16 tgatatgtctggtattcttgggtt 39
          ||||||||||| ||||||||||||
Sbjct: 23 tgatatgtctgatattcttgggtt 46