miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38163_cbr-mir-52:mirbase
Length = 98
Score = 91.7 bits (46), Expect = 9e-20
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 6 ctctaacagtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacgttac 65
|||| ||||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct: 8 ctctgacagtccacccgtacatatgtttccgtgcttgacatag-agctcaatcacgatac 66
Query: 66 aatgaaagggtagccggt 83
||||| |||||||||||
Sbjct: 67 aatgagcgggtagccggt 84
>38515_crm-mir-52-2:mirbase
Length = 93
Score = 69.9 bits (35), Expect = 3e-13
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 14 gtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacgttacaat 68
|||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 15 gtccacccgtacatatgtttccgtgcttgacattg-tgctcaatcacgttacaat 68
>38514_crm-mir-52-1:mirbase
Length = 93
Score = 69.9 bits (35), Expect = 3e-13
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 14 gtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacgttacaat 68
|||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 15 gtccacccgtacatatgtttccgtgcttgacattg-tgctcaatcacgttacaat 68
>38290_cel-mir-53:mirbase
Length = 99
Score = 69.9 bits (35), Expect = 3e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 11 acagtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacg 61
||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct: 10 acagtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacg 60
