miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38163_cbr-mir-52:mirbase
Length = 98
Score = 69.9 bits (35), Expect = 3e-13
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 6 tctgacagtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacg 60
||||||||||||||||||||| |||||||||||||||| | | ||||||||||||
Sbjct: 9 tctgacagtccacccgtacatatgtttccgtgcttgacat-agagctcaatcacg 62
>38289_cel-mir-52:mirbase
Length = 100
Score = 69.9 bits (35), Expect = 3e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 10 acagtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacg 60
||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct: 11 acagtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacg 61
>38515_crm-mir-52-2:mirbase
Length = 93
Score = 61.9 bits (31), Expect = 8e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 gtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacggcacaatatatg 72
|||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 15 gtccacccgtacatatgtttccgtgcttgacat-tgtgctcaatcacgttacaatatatg 73
Query: 73 ggtcgcc 79
|||||||
Sbjct: 74 ggtcgcc 80
>38514_crm-mir-52-1:mirbase
Length = 93
Score = 61.9 bits (31), Expect = 8e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 gtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacggcacaatatatg 72
|||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 15 gtccacccgtacatatgtttccgtgcttgacat-tgtgctcaatcacgttacaatatatg 73
Query: 73 ggtcgcc 79
|||||||
Sbjct: 74 ggtcgcc 80
