miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38534_crm-mir-72:mirbase
Length = 113
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 7 cgtcagagctaggcaagatgttggcatagctgaatg 42
||||| ||||||||||||||||||||||||||||||
Sbjct: 11 cgtcaaagctaggcaagatgttggcatagctgaatg 46
>38856_lgi-mir-31:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 ctaggcaagatgttggcatagctga 39
|||||||||||||||||||||||||
Sbjct: 19 ctaggcaagatgttggcatagctga 43
>38106_bma-mir-72:mirbase
Length = 115
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctgaa 40
||||||||||||||||||||||||
Sbjct: 18 aggcaagatgttggcatagctgaa 41
>38737_cte-mir-31:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctga 39
|||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctga 43
>38622_ppc-mir-72:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctga 39
|||||||||||||||||||||||
Sbjct: 24 aggcaagatgttggcatagctga 46
>35182_aae-mir-31:mirbase
Length = 149
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 ggcaagatgttggcatagctgaa 40
|||||||||||||||||||||||
Sbjct: 52 ggcaagatgttggcatagctgaa 74
>36013_cqu-mir-31:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 ggcaagatgttggcatagctgaa 40
|||||||||||||||||||||||
Sbjct: 13 ggcaagatgttggcatagctgaa 35
>38181_cbr-mir-72:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 5e-06
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 12 gagctaggcaagatgttggcatagctgaatg 42
|||||||||| ||||||||||||||||||||
Sbjct: 12 gagctaggca-gatgttggcatagctgaatg 41
>25738_xtr-mir-31:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 17 aggcaagatgttggcatagctg 38
>25922_gga-mir-31:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 25 aggcaagatgttggcatagctg 46
>26429_tgu-mir-31:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 25 aggcaagatgttggcatagctg 46
>27357_mdo-mir-31:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 12 aggcaagatgttggcatagctg 33
>31456_oan-mir-31:mirbase
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 17 aggcaagatgttggcatagctg 38
>34813_spu-mir-31:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 19 aggcaagatgttggcatagctg 40
>34869_sko-mir-31:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctg 38
||||||||||||||||||||||
Sbjct: 21 aggcaagatgttggcatagctg 42
>24656_bfl-mir-31:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 ggcaagatgttggcatagctg 38
|||||||||||||||||||||
Sbjct: 20 ggcaagatgttggcatagctg 40
>34252_dre-mir-31:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 ggcaagatgttggcatagctg 38
|||||||||||||||||||||
Sbjct: 9 ggcaagatgttggcatagctg 29
>24814_cin-mir-31:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ggcaagatgttggcatagct 37
||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36
>25319_csa-mir-31:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 ggcaagatgttggcatagct 37
||||||||||||||||||||
Sbjct: 17 ggcaagatgttggcatagct 36
>37720_tca-mir-31:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctgaa 40
||||||||||| ||||||||||||
Sbjct: 11 aggcaagatgtcggcatagctgaa 34
>37719_tca-mir-31:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 17 aggcaagatgttggcatagctgaa 40
||||||||||| ||||||||||||
Sbjct: 11 aggcaagatgtcggcatagctgaa 34
