miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38313_cel-mir-77:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 gcatctgccaaaccgcccgtttggatggttgtgctctgaggaaatacgcacagaatgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatctgccaaaccgcccgtttggatggttgtgctctgaggaaatacgcacagaatgtca 60
Query: 61 tttcatcaggccatagctgtccaaattggtatagagtttg 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttcatcaggccatagctgtccaaattggtatagagtttg 100
>38540_crm-mir-77-1:mirbase
Length = 108
Score = 91.7 bits (46), Expect = 9e-20
Identities = 66/72 (91%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 19 gtttggatggttgtgctctgaggaaatacg---cacagaatgtcatttcatcaggccata 75
|||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 20 gtttggatggctgtgctctgaggaaatacggctcataaaatgtcatttcatcaggccata 79
Query: 76 gctgtccaaatt 87
||||||||||||
Sbjct: 80 gctgtccaaatt 91
>38188_cbr-mir-77-1:mirbase
Length = 96
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 55 atgtcatttcatcaggccatagctgtccaaatt 87
|||||||||||||||||||||||||||||||||
Sbjct: 54 atgtcatttcatcaggccatagctgtccaaatt 86
>38189_cbr-mir-77-2:mirbase
Length = 96
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 55 atgtcatttcatcaggccatagctgtccaaatt 87
|||||||||||||||||||||||||||||||||
Sbjct: 54 atgtcatttcatcaggccatagctgtccaaatt 86
>38541_crm-mir-77-2:mirbase
Length = 120
Score = 63.9 bits (32), Expect = 2e-11
Identities = 58/67 (86%), Gaps = 6/67 (8%)
Strand = Plus / Plus
Query: 19 gtttggatggttgtgctctgaggaaatacgcacagaatgtcatttcatcaggccatagct 78
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 23 gtttggatggctgtgctctgaggaaacacgg------tgtcatttcatcaggccatagct 76
Query: 79 gtccaaa 85
|||||||
Sbjct: 77 gtccaaa 83
