miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38190_cbr-mir-79:mirbase
Length = 93
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 7 acattctccgatctttggtgattcagcttcaatgattggctacaggtttctttcataaag 66
||||||||||||||||||||||||||||| |||||| | | ||| || |||||||||
Sbjct: 4 acattctccgatctttggtgattcagcttaaatgatagaattcagacgtc-ttcataaag 62
Query: 67 ctaggttaccaaagctcggcgt 88
||||||||||||||||||||||
Sbjct: 63 ctaggttaccaaagctcggcgt 84
>38542_crm-mir-79:mirbase
Length = 120
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagctcggcg 87
||||||||||||||||||||||||||||||
Sbjct: 68 ttcataaagctaggttaccaaagctcggcg 97
>38743_cte-mir-79:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagct 82
|||||||||||||||||||||||||
Sbjct: 58 ttcataaagctaggttaccaaagct 82
>38729_cte-mir-9:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagct 82
|||||||||||||||||||||||||
Sbjct: 56 ttcataaagctaggttaccaaagct 80
>38623_ppc-mir-79:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagct 82
|||||||||||||||||||||||||
Sbjct: 56 ttcataaagctaggttaccaaagct 80
>38099_bma-mir-9:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagct 82
|||||||||||||||||||||||||
Sbjct: 50 ttcataaagctaggttaccaaagct 74
>38107_bma-mir-79:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagct 82
|||||||||||||||||||||||||
Sbjct: 50 ttcataaagctaggttaccaaagct 74
>34808_spu-mir-9:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tcataaagctaggttaccaaag 80
||||||||||||||||||||||
Sbjct: 58 tcataaagctaggttaccaaag 79
>34817_spu-mir-79:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tcataaagctaggttaccaaag 80
||||||||||||||||||||||
Sbjct: 59 tcataaagctaggttaccaaag 80
>34967_isc-mir-79:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tcataaagctaggttaccaaag 80
||||||||||||||||||||||
Sbjct: 59 tcataaagctaggttaccaaag 80
>35000_dpu-mir-9:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tcataaagctaggttaccaaag 80
||||||||||||||||||||||
Sbjct: 57 tcataaagctaggttaccaaag 78
>35007_dpu-mir-79:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tcataaagctaggttaccaaag 80
||||||||||||||||||||||
Sbjct: 59 tcataaagctaggttaccaaag 80
>35186_aae-mir-79:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tttcataaagctaggttaccaaagc 81
|||||||||||||| ||||||||||
Sbjct: 51 tttcataaagctagattaccaaagc 75
>35284_aga-mir-79:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tttcataaagctaggttaccaaagc 81
|||||||||||||| ||||||||||
Sbjct: 54 tttcataaagctagattaccaaagc 78
>36016_cqu-mir-79:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 tttcataaagctaggttaccaaagc 81
|||||||||||||| ||||||||||
Sbjct: 44 tttcataaagctagattaccaaagc 68
>38861_lgi-mir-79:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 ataaagctaggttaccaaag 80
||||||||||||||||||||
Sbjct: 61 ataaagctaggttaccaaag 80
>38852_lgi-mir-9:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 ataaagctaggttaccaaag 80
||||||||||||||||||||
Sbjct: 60 ataaagctaggttaccaaag 79
>34865_sko-mir-9:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 ataaagctaggttaccaaag 80
||||||||||||||||||||
Sbjct: 49 ataaagctaggttaccaaag 68
>34872_sko-mir-79:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61 ataaagctaggttaccaaag 80
||||||||||||||||||||
Sbjct: 61 ataaagctaggttaccaaag 80
>35520_bmo-mir-9b:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 40 ttcataaagctagattaccaaagc 17
>35533_bmo-mir-79:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 55 ttcataaagctagattaccaaagc 78
>36102_dan-mir-79:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 52 ttcataaagctagattaccaaagc 75
>36180_der-mir-79:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 53 ttcataaagctagattaccaaagc 76
>36268_dgr-mir-79:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 45 ttcataaagctagattaccaaagc 68
>36375_dme-mir-79:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 56 ttcataaagctagattaccaaagc 79
>36376_dme-mir-79:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 56 ttcataaagctagattaccaaagc 79
>36778_dmo-mir-79:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 45 ttcataaagctagattaccaaagc 68
>36851_dpe-mir-79:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 46 ttcataaagctagattaccaaagc 69
>36927_dps-mir-79:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 51 ttcataaagctagattaccaaagc 74
>37140_dse-mir-79:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 53 ttcataaagctagattaccaaagc 76
>37354_dvi-mir-79:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 53 ttcataaagctagattaccaaagc 76
>37431_dwi-mir-79-1:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 45 ttcataaagctagattaccaaagc 68
>37432_dwi-mir-79-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 45 ttcataaagctagattaccaaagc 68
>37508_dya-mir-79:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 ttcataaagctaggttaccaaagc 81
||||||||||||| ||||||||||
Sbjct: 53 ttcataaagctagattaccaaagc 76
