miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38192_cbr-mir-81:mirbase
Length = 90
Score = 85.7 bits (43), Expect = 6e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 23 gtcggttttcaccgtgatctgagagcaatc-caaaaatgcttttctgagatcatcgtgaa 81
||||||||||||| ||||||||||||||| | | ||||||| |||||||||||||||||
Sbjct: 12 gtcggttttcaccttgatctgagagcaataaccagaatgcttatctgagatcatcgtgaa 71
Query: 82 agctagttgtt 92
|||||||||||
Sbjct: 72 agctagttgtt 82
>38544_crm-mir-81:mirbase
Length = 94
Score = 79.8 bits (40), Expect = 4e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 tcgtgcccaacagtcggttttcaccgtgatctgagagcaatccaaaaatgcttttctgag 70
||||| ||| ||||||||||||||| |||||||||||| | | | ||||||| ||||||
Sbjct: 3 tcgtggccagcagtcggttttcaccttgatctgagagctaaac-ataatgcttatctgag 61
Query: 71 atcatcgtgaaagctagttg 90
||||||||||||||||||||
Sbjct: 62 atcatcgtgaaagctagttg 81
>38545_crm-mir-82:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 tctgagatcatcgtgaaagctagttgtt 92
|||||||||||||||||||| |||||||
Sbjct: 55 tctgagatcatcgtgaaagccagttgtt 82
>38320_cel-mir-82:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 65 tctgagatcatcgtgaaagctagttgtt 92
|||||||||||||||||||| |||||||
Sbjct: 59 tctgagatcatcgtgaaagccagttgtt 86
>38193_cbr-mir-82:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tctgagatcatcgtgaaagctagttg 90
|||||||||||||||||||| |||||
Sbjct: 57 tctgagatcatcgtgaaagccagttg 82
>38624_ppc-mir-81:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 63 tttctgagatcatcgtgaaagcta 86
||||||||||||| ||||||||||
Sbjct: 50 tttctgagatcatagtgaaagcta 73
