miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38551_crm-mir-90:mirbase
          Length = 111

 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 60 gttgatatgttgtttgaatgccccttgaa 88
          |||||||||||||||||||||||||||||
Sbjct: 63 gttgatatgttgtttgaatgccccttgaa 91

>38199_cbr-mir-90:mirbase
          Length = 97

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 60 gttgatatgttgtttgaatgccccttga 87
          ||||||||||||||||||||||||||||
Sbjct: 56 gttgatatgttgtttgaatgccccttga 83



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 7  catttcgagcggctttcaacgacgatatcaacc 39
          |||||| |||||||||||||||| |||||||||
Sbjct: 7  catttcaagcggctttcaacgactatatcaacc 39

>38200_cbr-mir-90b:mirbase
          Length = 113

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 6  ccatttcgagcggctttcaacgacgatatcaaccga 41
          ||||||| |||||| ||||||||| |||||||||||
Sbjct: 14 ccatttcaagcggccttcaacgactatatcaaccga 49