miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38560_crm-mir-236:mirbase
Length = 108
Score = 129 bits (65), Expect = 4e-31
Identities = 90/97 (92%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 3 ggtgaccgatgtccagcgtcttacctgttcaatatttagactgactatc-aaagagatct 61
|||||||||||||||||||||||||||||||||||||||||||| || | | |||||||
Sbjct: 6 ggtgaccgatgtccagcgtcttacctgttcaatatttagactgattagctcatgagatct 65
Query: 62 aatactgtcaggtaatgacgctggattgtcatgtcat 98
||||||||||||||||||||||||||| || ||||||
Sbjct: 66 aatactgtcaggtaatgacgctggattatcttgtcat 102
>38211_cbr-mir-236:mirbase
Length = 100
Score = 103 bits (52), Expect = 2e-23
Identities = 86/96 (89%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 4 gtgaccgatgtccagcgtcttacctgttcaatatttagactga-ctatcaaagagatcta 62
|||||| |||||||||||||||||||||||||||||||||||| | | | | || ||||
Sbjct: 3 gtgaccaatgtccagcgtcttacctgttcaatatttagactgaccaaacccatagctcta 62
Query: 63 atactgtcaggtaatgacgctggattgtcatgtcat 98
||||||||||||||||||||||||| ||| ||||||
Sbjct: 63 atactgtcaggtaatgacgctggatagtcttgtcat 98
>38120_bma-mir-236:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 atctaatactgtcaggtaatgacg 81
||||||||||||||||||||||||
Sbjct: 48 atctaatactgtcaggtaatgacg 71
>35047_api-mir-8:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 tctaatactgtcaggtaatga 79
|||||||||||||||||||||
Sbjct: 39 tctaatactgtcaggtaatga 59
