miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>38421_cel-mir-1829b:mirbase
          Length = 60

 Score = 87.7 bits (44), Expect = 8e-19
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                          
Query: 13 agatggttgtaaaacatcgagtactacaaccactggaatttctctatt 60
          ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13 agatggttgtaaaacatcgagtattacaaccactggaatttctctatt 60




>38420_cel-mir-1829a:mirbase
          Length = 60

 Score = 60.0 bits (30), Expect = 2e-10
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                    
Query: 19 ttgtaaaacatcgagtactacaaccactggaatttctctatt 60
          |||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 19 ttgtaaaaaatcgagtattacaaccattggaatttctctatt 60




>38459_cel-mir-4812:mirbase
          Length = 76

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 38 acaaccactggaatttctctatt 60
          |||||||||| ||||||||||||
Sbjct: 44 acaaccactgcaatttctctatt 66