miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38494_crm-mir-35c-3:mirbase
Length = 95
Score = 133 bits (67), Expect = 2e-32
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 1 tcggtgggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcac 60
||||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 1 tcggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcac 60
Query: 61 cgggtgaaaatcaaggcaggtccgatc 87
||||||||||||| |||||||||||||
Sbjct: 61 cgggtgaaaatcagggcaggtccgatc 87
>38492_crm-mir-35c-1:mirbase
Length = 94
Score = 123 bits (62), Expect = 2e-29
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 tcggtgggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcac 60
||||| |||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 1 tcggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcac 60
Query: 61 cgggtgaaaatcaaggcaggtccgat 86
||||||||||||| ||||||||||||
Sbjct: 61 cgggtgaaaatcagggcaggtccgat 86
>38493_crm-mir-35c-2:mirbase
Length = 117
Score = 119 bits (60), Expect = 4e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 7 ggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcaccgggtg 66
||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 15 ggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccgggtg 74
Query: 67 aaaatcaaggcaggtccgat 86
||||||| ||||||||||||
Sbjct: 75 aaaatcagggcaggtccgat 94
>38495_crm-mir-35d-1:mirbase
Length = 91
Score = 87.7 bits (44), Expect = 1e-18
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 7 ggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcaccgggtg 66
||||||| ||| |||||||||| || ||||| |||||||||| |||||||||||||||||
Sbjct: 6 ggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccgggtg 65
Query: 67 aaaatcaaggcaggtccgat 86
||||||| ||||| |||||
Sbjct: 66 aaaatcagagcagggccgat 85
>38496_crm-mir-35d-2:mirbase
Length = 92
Score = 63.9 bits (32), Expect = 2e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 34 cggtgatatttcaagaatgattatcaccgggtgaaaatcaaggcaggtccgatctcaccg 93
|||| ||||||||| |||||||||||||||||||||||| ||||| |||||| |||||
Sbjct: 33 cggtcatatttcaaatatgattatcaccgggtgaaaatcagagcagggccgatcccaccg 92
>38144_cbr-mir-35d:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 23 ggtttttgcttcggtgatatttcaagaatgattatcaccgggtgaaaat 71
||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 21 ggtttttgcttcggtgatattcgaagagccgttatcaccgggtgaaaat 69
>38128_cbr-mir-35:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 25 tttttgcttcggtgatatttcaagaatgattatcaccgggtgaaaa 70
||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct: 27 tttttccttcggtgatattcgaagaatcgctatcaccgggtgaaaa 72
>38490_crm-mir-35a-2:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 33 tcggtgatatttcaagaatgattatcaccgggtgaa 68
||||| ||| |||||| ||||||||||||||||||
Sbjct: 30 tcggttatacttcaagtgtgattatcaccgggtgaa 65
