miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38494_crm-mir-35c-3:mirbase
Length = 95
Score = 135 bits (68), Expect = 8e-33
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 11 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 70
||||||||||||||||||||| |||| |||||||||||||||| |||| |||||||||||
Sbjct: 3 ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62
Query: 71 ggtgaaaatcagggcaggtccgat 94
||||||||||||||||||||||||
Sbjct: 63 ggtgaaaatcagggcaggtccgat 86
>38492_crm-mir-35c-1:mirbase
Length = 94
Score = 125 bits (63), Expect = 8e-30
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 11 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 70
||||||||||||||| ||||| |||||||| |||||||| ||| |||| |||||||||||
Sbjct: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62
Query: 71 ggtgaaaatcagggcaggtccgattcc 97
|||||||||||||||||||||||||||
Sbjct: 63 ggtgaaaatcagggcaggtccgattcc 89
>38491_crm-mir-35b:mirbase
Length = 94
Score = 119 bits (60), Expect = 5e-28
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 15 ggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccgggtg 74
||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 7 ggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcaccgggtg 66
Query: 75 aaaatcagggcaggtccgat 94
||||||| ||||||||||||
Sbjct: 67 aaaatcaaggcaggtccgat 86
>38495_crm-mir-35d-1:mirbase
Length = 91
Score = 109 bits (55), Expect = 5e-25
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 11 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 70
||||||||||| ||||||||| ||||||| ||||| |||||||||| | |||||||||||
Sbjct: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
Query: 71 ggtgaaaatcagggcaggtccgattcc 97
|||||||||||| ||||| ||||||||
Sbjct: 62 ggtgaaaatcagagcagggccgattcc 88
>38496_crm-mir-35d-2:mirbase
Length = 92
Score = 65.9 bits (33), Expect = 6e-12
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 10 tggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcacc 69
|||||||||||| | | ||||| || |||| |||| ||||||||| | ||||||||||
Sbjct: 1 tggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcacc 60
Query: 70 gggtgaaaatcagggcaggtccgat 94
||||||||||||| ||||| |||||
Sbjct: 61 gggtgaaaatcagagcagggccgat 85
>38135_cbr-mir-35b-3:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 15 ggatcggacctccactgattttcgcttcggtgatatttcaa--gaacgattatcaccggg 72
||||||||||||||| |||||| || |||||||| | ||| | |||||||||||||||
Sbjct: 7 ggatcggacctccaccgattttttctgcggtgatactccaatgggacgattatcaccggg 66
Query: 73 tgaaaa 78
||||||
Sbjct: 67 tgaaaa 72
>38144_cbr-mir-35d:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 33 ttttcgcttcggtgatatttcaagaacgattatcaccgggtgaaaat 79
|||| |||||||||||||| |||| | ||||||||||||||||||
Sbjct: 23 tttttgcttcggtgatattcgaagagccgttatcaccgggtgaaaat 69
>38145_cbr-mir-35e:mirbase
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 60 gattatcaccgggtgaaaatcagggcaggtccga 93
|||||||||||||||| ||| ||| |||||||||
Sbjct: 64 gattatcaccgggtgacaattaggacaggtccga 97
>38136_cbr-mir-35b-4:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 acgattatcaccgggtgaaaa 78
|||||||||||||||||||||
Sbjct: 53 acgattatcaccgggtgaaaa 73
