miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38154_cbr-mir-44:mirbase
Length = 95
Score = 127 bits (64), Expect = 2e-30
Identities = 90/97 (92%), Gaps = 5/97 (5%)
Strand = Plus / Plus
Query: 4 gagaatggccgatctggatgtgctcgttagtcatagacgaatcaca---gaaaacagtca 60
||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 1 gagaagggccgatctggatgtgctcgttagtcatagacgaatcacacttgaaa--ggtca 58
Query: 61 tatgactagagacacattcagcttggcctggatctca 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggcctggatctca 95
>38279_cel-mir-44:mirbase
Length = 96
Score = 69.9 bits (35), Expect = 3e-13
Identities = 78/90 (86%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 2 gagagaatggccgatctggatgtgctcgttagtcatagacgaatcacagaaaacagt-ca 60
|||| ||||||| ||||||||||||||||| |||||||||| ||| ||| || ||
Sbjct: 1 gagaaaatggccaatctggatgtgctcgttggtcatagacg--tcaacacgaactgttca 58
Query: 61 tatgactagagacacattcagcttggcctg 90
||||||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggcctg 88
>38280_cel-mir-44:mirbase
Length = 96
Score = 69.9 bits (35), Expect = 3e-13
Identities = 78/90 (86%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 2 gagagaatggccgatctggatgtgctcgttagtcatagacgaatcacagaaaacagt-ca 60
|||| ||||||| ||||||||||||||||| |||||||||| ||| ||| || ||
Sbjct: 1 gagaaaatggccaatctggatgtgctcgttggtcatagacg--tcaacacgaactgttca 58
Query: 61 tatgactagagacacattcagcttggcctg 90
||||||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggcctg 88
>38508_crm-mir-45:mirbase
Length = 109
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||
Sbjct: 66 tatgactagagacacattcagcttggc 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 ctggatgtgctcgttagtcata 38
||||||||||||||||||||||
Sbjct: 23 ctggatgtgctcgttagtcata 44
>38155_cbr-mir-45-1:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||
Sbjct: 53 tatgactagagacacattcagcttggc 79
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctggatgtgctcgttagtcatag 39
|||||||||||||||||||||||
Sbjct: 10 ctggatgtgctcgttagtcatag 32
>38156_cbr-mir-45-2:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||
Sbjct: 53 tatgactagagacacattcagcttggc 79
>38281_cel-mir-45:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggc 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 ctggatgtgctcgttagtcata 38
||||||||||||||||||||||
Sbjct: 15 ctggatgtgctcgttagtcata 36
>38282_cel-mir-45:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggc 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 ctggatgtgctcgttagtcata 38
||||||||||||||||||||||
Sbjct: 15 ctggatgtgctcgttagtcata 36
>38602_ppc-mir-45:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttgg 86
||||||||||||||||||||||||||
Sbjct: 61 tatgactagagacacattcagcttgg 86
