miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38155_cbr-mir-45-1:mirbase
Length = 82
Score = 121 bits (61), Expect = 1e-28
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 15 gtgccacgctggatgtgctcgttagtcataataacctcatttagtaaggcttatgactag 74
|||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||
Sbjct: 2 gtgccacgctggatgtgctcgttagtcatagtaacctcatcaattcaggcttatgactag 61
Query: 75 agacacattcagcttggcgcc 95
|||||||||||||||||||||
Sbjct: 62 agacacattcagcttggcgcc 82
>38156_cbr-mir-45-2:mirbase
Length = 82
Score = 113 bits (57), Expect = 3e-26
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 15 gtgccacgctggatgtgctcgttagtcataataacctcatttagtaaggcttatgactag 74
||||||||||||||||| |||||||||||| ||||||||| | | ||||||||||||||
Sbjct: 2 gtgccacgctggatgtgttcgttagtcatagtaacctcatcaattcaggcttatgactag 61
Query: 75 agacacattcagcttggcgcc 95
|||||||||||||||||||||
Sbjct: 62 agacacattcagcttggcgcc 82
>38281_cel-mir-45:mirbase
Length = 96
Score = 97.6 bits (49), Expect = 2e-21
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 15 gtgccacgctggatgtgctcgttagtcataataacct-catttagtaaggcttatgacta 73
||||||||||||||||||||||||||||||||| ||| || || |||| ||||||||
Sbjct: 7 gtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactatgacta 66
Query: 74 gagacacattcagcttggcgccgaa 98
|||||||||||||||||||||||||
Sbjct: 67 gagacacattcagcttggcgccgaa 91
>38282_cel-mir-45:mirbase
Length = 96
Score = 97.6 bits (49), Expect = 2e-21
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 15 gtgccacgctggatgtgctcgttagtcataataacct-catttagtaaggcttatgacta 73
||||||||||||||||||||||||||||||||| ||| || || |||| ||||||||
Sbjct: 7 gtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactatgacta 66
Query: 74 gagacacattcagcttggcgccgaa 98
|||||||||||||||||||||||||
Sbjct: 67 gagacacattcagcttggcgccgaa 91
>38602_ppc-mir-45:mirbase
Length = 96
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 65 ttatgactagagacacattcagcttggcgccg 96
||||||||||||||||||||||||||| ||||
Sbjct: 60 ttatgactagagacacattcagcttggggccg 91
>38507_crm-mir-44:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 tatgactagagacacattcagcttggc 92
|||||||||||||||||||||||||||
Sbjct: 61 tatgactagagacacattcagcttggc 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 ctggatgtgctcgttagtcata 44
||||||||||||||||||||||
Sbjct: 17 ctggatgtgctcgttagtcata 38
>38154_cbr-mir-44:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 tatgactagagacacattcagcttggc 92
|||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggc 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 ctggatgtgctcgttagtcata 44
||||||||||||||||||||||
Sbjct: 14 ctggatgtgctcgttagtcata 35
>38279_cel-mir-44:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 tatgactagagacacattcagcttggc 92
|||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggc 85
>38280_cel-mir-44:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 tatgactagagacacattcagcttggc 92
|||||||||||||||||||||||||||
Sbjct: 59 tatgactagagacacattcagcttggc 85
