miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38158_cbr-mir-47:mirbase
Length = 93
Score = 115 bits (58), Expect = 7e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 16 agactgaagagagcattctgttgacagttcgattccgaactcctactgtcatggaggcgc 75
||||||||| |||| |||| |||||||||||||| ||||||| |||||||||||||||||
Sbjct: 11 agactgaagggagctttcttttgacagttcgatttcgaactcttactgtcatggaggcgc 70
Query: 76 tctcttcaggtgatctctggct 97
||||||||||||| ||||||||
Sbjct: 71 tctcttcaggtgaactctggct 92
>38284_cel-mir-47:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 59 tactgtcatggaggcgctctcttcaggtgatctctggc 96
|||||||||||||||||||||||||| |||| ||||||
Sbjct: 58 tactgtcatggaggcgctctcttcagatgatgtctggc 95
>38509_crm-mir-46:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 59 tactgtcatggaggcgctctcttcaggtgatc 90
||||||||||||| |||||||||||| |||||
Sbjct: 65 tactgtcatggagtcgctctcttcagatgatc 96
>38157_cbr-mir-46:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 ctgtcatggaggcgctctcttcaggtgatct 91
||||||||||| |||||||||||| ||||||
Sbjct: 57 ctgtcatggagtcgctctcttcagatgatct 87
>38283_cel-mir-46:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 ctgtcatggaggcgctctcttcaggtgatc 90
||||||||||| |||||||||||| |||||
Sbjct: 60 ctgtcatggagtcgctctcttcagatgatc 89
>38603_ppc-mir-46:mirbase
Length = 111
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 15 gagactgaagagagcattctgttgacagt 43
||||| ||||||||| |||||||||||||
Sbjct: 18 gagaccgaagagagccttctgttgacagt 46
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 62 tgtcatggaggcgctctcttcagg 85
|||||||||| |||||||||||||
Sbjct: 71 tgtcatggagtcgctctcttcagg 94
