miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38514_crm-mir-52-1:mirbase
Length = 93
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 taccctctactaccgtccacccgtacatatgtttccgtgcttgacattgtgctcaatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taccctctactaccgtccacccgtacatatgtttccgtgcttgacattgtgctcaatcac 60
Query: 61 gttacaatatatgggtcgccggtcttaggcggt 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 gttacaatatatgggtcgccggtcttaggcggt 93
>38163_cbr-mir-52:mirbase
Length = 98
Score = 83.8 bits (42), Expect = 2e-17
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 15 gtccacccgtacatatgtttccgtgcttgacattgtgctcaatcacgttacaat 68
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 16 gtccacccgtacatatgtttccgtgcttgacatagagctcaatcacgatacaat 69
>38289_cel-mir-52:mirbase
Length = 100
Score = 69.9 bits (35), Expect = 3e-13
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 15 gtccacccgtacatatgtttccgtgcttgacattg-tgctcaatcacgttacaat 68
|||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 14 gtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacgttacaat 68
>38290_cel-mir-53:mirbase
Length = 99
Score = 61.9 bits (31), Expect = 7e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 15 gtccacccgtacatatgtttccgtgcttgacat-tgtgctcaatcacgttacaatatatg 73
|||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 13 gtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacggcacaatatatg 72
Query: 74 ggtcgcc 80
|||||||
Sbjct: 73 ggtcgcc 79
