miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38519_crm-mir-58b:mirbase
Length = 109
Score = 186 bits (94), Expect = 2e-48
Identities = 108/110 (98%), Gaps = 2/110 (1%)
Strand = Plus / Plus
Query: 2 cgtttgatgctcgccatatcccattgccctactattcgcatctcatcacttcctccagta 61
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtttgatgctcgccatatcc-attgccctactattcgcatctcatcacttcctccagta 59
Query: 62 atataaggatgagatcgtttcagtacggcaatggaaagagctatataacg 111
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 60 atataaggatgagatcg-ttcagtacggcaatggaaagagctatataacg 108
>38296_cel-mir-58:mirbase
Length = 97
Score = 85.7 bits (43), Expect = 6e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 22 ccattgccctactattcgcatctcatcacttcctccagtaatataaggatgagatcgttt 81
||||||||||||| |||||||||||||||||| |||| || ||| ||||||||||| ||
Sbjct: 12 ccattgccctactcttcgcatctcatcacttcgtccaataccatagggatgagatcg-tt 70
Query: 82 cagtacggcaatgga 96
|||||||||||||||
Sbjct: 71 cagtacggcaatgga 85
>38171_cbr-mir-58:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 22 ccattgccctactattcgcatctcatcact 51
||||||||||||||||||||||||||||||
Sbjct: 3 ccattgccctactattcgcatctcatcact 32
Score = 56.0 bits (28), Expect = 6e-09
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 62 atataaggatgagatcgtttcagtacggcaatggaa 97
||||||||||||||||| ||||||||||||||||||
Sbjct: 50 atataaggatgagatcg-ttcagtacggcaatggaa 84
