miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38540_crm-mir-77-1:mirbase
Length = 108
Score = 91.7 bits (46), Expect = 1e-19
Identities = 72/82 (87%), Gaps = 9/82 (10%)
Strand = Plus / Plus
Query: 11 aaagagctgttagtttggatggctgtgctctgaggaaacacgg---------tgtcattt 61
|||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 8 aaagagctgttagtttggatggctgtgctctgaggaaatacggctcataaaatgtcattt 67
Query: 62 catcaggccatagctgtccaaa 83
||||||||||||||||||||||
Sbjct: 68 catcaggccatagctgtccaaa 89
>38313_cel-mir-77:mirbase
Length = 100
Score = 63.9 bits (32), Expect = 3e-11
Identities = 58/67 (86%), Gaps = 6/67 (8%)
Strand = Plus / Plus
Query: 23 gtttggatggctgtgctctgaggaaacacgg------tgtcatttcatcaggccatagct 76
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 19 gtttggatggttgtgctctgaggaaatacgcacagaatgtcatttcatcaggccatagct 78
Query: 77 gtccaaa 83
|||||||
Sbjct: 79 gtccaaa 85
>38314_cel-mir-77:mirbase
Length = 100
Score = 63.9 bits (32), Expect = 3e-11
Identities = 58/67 (86%), Gaps = 6/67 (8%)
Strand = Plus / Plus
Query: 23 gtttggatggctgtgctctgaggaaacacgg------tgtcatttcatcaggccatagct 76
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 19 gtttggatggttgtgctctgaggaaatacgcacagaatgtcatttcatcaggccatagct 78
Query: 77 gtccaaa 83
|||||||
Sbjct: 79 gtccaaa 85
>38188_cbr-mir-77-1:mirbase
Length = 96
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 tgtcatttcatcaggccatagctgtccaaa 83
||||||||||||||||||||||||||||||
Sbjct: 55 tgtcatttcatcaggccatagctgtccaaa 84
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 14 gagctgttagtttggatggctgtgctctgaggaaa 48
||||||| | ||||||| |||||||||||||||||
Sbjct: 1 gagctgtgaatttggatagctgtgctctgaggaaa 35
>38189_cbr-mir-77-2:mirbase
Length = 96
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 tgtcatttcatcaggccatagctgtccaaa 83
||||||||||||||||||||||||||||||
Sbjct: 55 tgtcatttcatcaggccatagctgtccaaa 84
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 14 gagctgttagtttggatggctgtgctctgaggaaa 48
||||||| | ||||||| |||||||||||||||||
Sbjct: 1 gagctgtgaatttggatagctgtgctctgaggaaa 35
