miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38190_cbr-mir-79:mirbase
Length = 93
Score = 81.8 bits (41), Expect = 1e-16
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 20 tccgatctttggtgattcagcttaaatgatagactcaatatgttagacttcataaagcta 79
||||||||||||||||||||||||||||||||| | | | || |||||||||||||
Sbjct: 10 tccgatctttggtgattcagcttaaatgatagaattcagacgt----cttcataaagcta 65
Query: 80 ggttaccaaagctcggcg 97
||||||||||||||||||
Sbjct: 66 ggttaccaaagctcggcg 83
>38316_cel-mir-79:mirbase
Length = 98
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 68 ttcataaagctaggttaccaaagctcggcg 97
||||||||||||||||||||||||||||||
Sbjct: 58 ttcataaagctaggttaccaaagctcggcg 87
>38743_cte-mir-79:mirbase
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagct 92
|||||||||||||||||||||||||||
Sbjct: 56 acttcataaagctaggttaccaaagct 82
>38729_cte-mir-9:mirbase
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagct 92
|||||||||||||||||||||||||||
Sbjct: 54 acttcataaagctaggttaccaaagct 80
>38099_bma-mir-9:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 cttcataaagctaggttaccaaagct 92
||||||||||||||||||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagct 74
>38107_bma-mir-79:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 cttcataaagctaggttaccaaagct 92
||||||||||||||||||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagct 74
>38623_ppc-mir-79:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 ttcataaagctaggttaccaaagct 92
|||||||||||||||||||||||||
Sbjct: 56 ttcataaagctaggttaccaaagct 80
>35000_dpu-mir-9:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 agacttcataaagctaggttaccaaag 90
|||| ||||||||||||||||||||||
Sbjct: 52 agacgtcataaagctaggttaccaaag 78
>35007_dpu-mir-79:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 agacttcataaagctaggttaccaaag 90
|||| ||||||||||||||||||||||
Sbjct: 54 agacgtcataaagctaggttaccaaag 80
>34808_spu-mir-9:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tcataaagctaggttaccaaag 90
||||||||||||||||||||||
Sbjct: 58 tcataaagctaggttaccaaag 79
>34817_spu-mir-79:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tcataaagctaggttaccaaag 90
||||||||||||||||||||||
Sbjct: 59 tcataaagctaggttaccaaag 80
>34967_isc-mir-79:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tcataaagctaggttaccaaag 90
||||||||||||||||||||||
Sbjct: 59 tcataaagctaggttaccaaag 80
>36102_dan-mir-79:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 50 acttcataaagctagattaccaaagc 75
>36180_der-mir-79:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 51 acttcataaagctagattaccaaagc 76
>36268_dgr-mir-79:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 43 acttcataaagctagattaccaaagc 68
>36375_dme-mir-79:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 54 acttcataaagctagattaccaaagc 79
>36376_dme-mir-79:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 54 acttcataaagctagattaccaaagc 79
>36778_dmo-mir-79:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 43 acttcataaagctagattaccaaagc 68
>36851_dpe-mir-79:mirbase
Length = 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 44 acttcataaagctagattaccaaagc 69
>36927_dps-mir-79:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 49 acttcataaagctagattaccaaagc 74
>37140_dse-mir-79:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 51 acttcataaagctagattaccaaagc 76
>37354_dvi-mir-79:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 51 acttcataaagctagattaccaaagc 76
>37431_dwi-mir-79-1:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 43 acttcataaagctagattaccaaagc 68
>37432_dwi-mir-79-2:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 43 acttcataaagctagattaccaaagc 68
>37508_dya-mir-79:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 acttcataaagctaggttaccaaagc 91
||||||||||||||| ||||||||||
Sbjct: 51 acttcataaagctagattaccaaagc 76
>38861_lgi-mir-79:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 ataaagctaggttaccaaag 90
||||||||||||||||||||
Sbjct: 61 ataaagctaggttaccaaag 80
>38852_lgi-mir-9:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 ataaagctaggttaccaaag 90
||||||||||||||||||||
Sbjct: 60 ataaagctaggttaccaaag 79
>34865_sko-mir-9:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 ataaagctaggttaccaaag 90
||||||||||||||||||||
Sbjct: 49 ataaagctaggttaccaaag 68
>34872_sko-mir-79:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 ataaagctaggttaccaaag 90
||||||||||||||||||||
Sbjct: 61 ataaagctaggttaccaaag 80
>35186_aae-mir-79:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 68 ttcataaagctaggttaccaaagc 91
||||||||||||| ||||||||||
Sbjct: 52 ttcataaagctagattaccaaagc 75
>35284_aga-mir-79:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 68 ttcataaagctaggttaccaaagc 91
||||||||||||| ||||||||||
Sbjct: 55 ttcataaagctagattaccaaagc 78
>35520_bmo-mir-9b:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 68 ttcataaagctaggttaccaaagc 91
||||||||||||| ||||||||||
Sbjct: 40 ttcataaagctagattaccaaagc 17
>35533_bmo-mir-79:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 68 ttcataaagctaggttaccaaagc 91
||||||||||||| ||||||||||
Sbjct: 55 ttcataaagctagattaccaaagc 78
>36016_cqu-mir-79:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 68 ttcataaagctaggttaccaaagc 91
||||||||||||| ||||||||||
Sbjct: 45 ttcataaagctagattaccaaagc 68
