miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38192_cbr-mir-81:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 3e-22
Identities = 65/69 (94%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 15 gtcggttttcaccttgatctgagagc--taaacataatgcttatctgagatcatcgtgaa 72
|||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 12 gtcggttttcaccttgatctgagagcaataaccagaatgcttatctgagatcatcgtgaa 71
Query: 73 agctagttg 81
|||||||||
Sbjct: 72 agctagttg 80
>38319_cel-mir-81:mirbase
Length = 108
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 3 tcgtggccagcagtcggttttcaccttgatctgagagctaaac-ataatgcttatctgag 61
||||| ||| ||||||||||||||| |||||||||||| | | | ||||||| ||||||
Sbjct: 11 tcgtgcccaacagtcggttttcaccgtgatctgagagcaatccaaaaatgcttttctgag 70
Query: 62 atcatcgtgaaagctagttg 81
||||||||||||||||||||
Sbjct: 71 atcatcgtgaaagctagttg 90
>38193_cbr-mir-82:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 atctgagatcatcgtgaaagctagttgc 82
||||||||||||||||||||| ||||||
Sbjct: 56 atctgagatcatcgtgaaagccagttgc 83
>38624_ppc-mir-81:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 cggttttcaccttgatctgagagctaa 43
|||||||||| ||||||||||||||||
Sbjct: 15 cggttttcacgttgatctgagagctaa 41
>38545_crm-mir-82:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 atctgagatcatcgtgaaagctagttg 81
||||||||||||||||||||| |||||
Sbjct: 54 atctgagatcatcgtgaaagccagttg 80
>38320_cel-mir-82:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 tctgagatcatcgtgaaagctagttg 81
|||||||||||||||||||| |||||
Sbjct: 59 tctgagatcatcgtgaaagccagttg 84
