miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38327_cel-mir-87:mirbase
Length = 94
Score = 135 bits (68), Expect = 7e-33
Identities = 87/92 (94%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 3 ggttgtgccttccggccgcctgacactttcgtctcaacctcgctgtctgatatagtcgta 62
||||||||| ||||||||||||| ||||||||||||||||||||||| ||| | ||||||
Sbjct: 1 ggttgtgccatccggccgcctgatactttcgtctcaacctcgctgtcagat-tggtcgta 59
Query: 63 ggtgagcaaagtttcaggtgtgccggaacaca 94
||||||||||||||||||||||||||||||||
Sbjct: 60 ggtgagcaaagtttcaggtgtgccggaacaca 91
>38198_cbr-mir-87:mirbase
Length = 95
Score = 113 bits (57), Expect = 2e-26
Identities = 77/81 (95%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 14 ccggccgcctgacactttcgtctcaacctcgctgtctgatatagtcgtaggtgagcaaag 73
|||||||||||| ||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 13 ccggccgcctgatactttcgtctcaacctcgctgtcaga-at-gtcgtaggtgagcaaag 70
Query: 74 tttcaggtgtgccggaacaca 94
|||||||||||||||||||||
Sbjct: 71 tttcaggtgtgccggaacaca 91
>34968_isc-mir-87:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 gtaggtgagcaaagtttcaggtgtg 84
|||||||||||||||||||||||||
Sbjct: 57 gtaggtgagcaaagtttcaggtgtg 81
>35056_api-mir-87a:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 taggtgagcaaagtttcaggtgtgc 85
|||||||||||||||||||||||||
Sbjct: 42 taggtgagcaaagtttcaggtgtgc 66
>38745_cte-mir-87b:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 gtaggtgagcaaagtttcaggtgt 83
||||||||||||||||||||||||
Sbjct: 57 gtaggtgagcaaagtttcaggtgt 80
>38628_ppc-mir-87:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 aggtgagcaaagtttcaggtgtgc 85
||||||||||||||||||||||||
Sbjct: 59 aggtgagcaaagtttcaggtgtgc 82
>38108_bma-mir-87a:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 gtaggtgagcaaagtttcaggtgt 83
||||||||||||||||||||||||
Sbjct: 47 gtaggtgagcaaagtttcaggtgt 70
>38744_cte-mir-87a:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 ggtgagcaaagtttcaggtgtgc 85
|||||||||||||||||||||||
Sbjct: 60 ggtgagcaaagtttcaggtgtgc 82
>35361_ame-mir-87-1:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 aggtgagcaaagtttcaggtgtg 84
|||||||||||||||||||||||
Sbjct: 68 aggtgagcaaagtttcaggtgtg 90
>38862_lgi-mir-87:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 aggtgagcaaagtttcaggtgt 83
||||||||||||||||||||||
Sbjct: 59 aggtgagcaaagtttcaggtgt 80
>35362_ame-mir-87-2:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ggtgagcaaagtttcaggtgtg 84
||||||||||||||||||||||
Sbjct: 69 ggtgagcaaagtttcaggtgtg 90
>37727_tca-mir-87a:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ggtgagcaaagtttcaggtgtg 84
||||||||||||||||||||||
Sbjct: 51 ggtgagcaaagtttcaggtgtg 72
>37728_tca-mir-87a:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ggtgagcaaagtttcaggtgtg 84
||||||||||||||||||||||
Sbjct: 51 ggtgagcaaagtttcaggtgtg 72
>38941_emu-mir-87:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 ggtgagcaaagtttcaggtgt 83
|||||||||||||||||||||
Sbjct: 72 ggtgagcaaagtttcaggtgt 92
>38918_egr-mir-87:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 ggtgagcaaagtttcaggtgt 83
|||||||||||||||||||||
Sbjct: 72 ggtgagcaaagtttcaggtgt 92
>35187_aae-mir-87:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 62 aggtgagcaaagtttcaggtgtgccgga 89
||||||||||| ||||||||||| ||||
Sbjct: 64 aggtgagcaaattttcaggtgtgtcgga 91
>36017_cqu-mir-87:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 62 aggtgagcaaagtttcaggtgtgccgga 89
||||||||||| ||||||||||| ||||
Sbjct: 47 aggtgagcaaattttcaggtgtgtcgga 74
>37729_tca-mir-87b:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 taggtgagcaaagtttcaggtgtg 84
||||||||||||| ||||||||||
Sbjct: 55 taggtgagcaaagattcaggtgtg 78
>37730_tca-mir-87b:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 taggtgagcaaagtttcaggtgtg 84
||||||||||||| ||||||||||
Sbjct: 55 taggtgagcaaagattcaggtgtg 78
