miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38339_cel-mir-236:mirbase
Length = 98
Score = 129 bits (65), Expect = 5e-31
Identities = 90/97 (92%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 6 ggtgaccgatgtccagcgtcttacctgttcaatatttagactgattagctcatgagatct 65
|||||||||||||||||||||||||||||||||||||||||||| || | | |||||||
Sbjct: 3 ggtgaccgatgtccagcgtcttacctgttcaatatttagactgactatc-aaagagatct 61
Query: 66 aatactgtcaggtaatgacgctggattatcttgtcat 102
||||||||||||||||||||||||||| || ||||||
Sbjct: 62 aatactgtcaggtaatgacgctggattgtcatgtcat 98
>38211_cbr-mir-236:mirbase
Length = 100
Score = 99.6 bits (50), Expect = 4e-22
Identities = 88/98 (89%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 7 gtgaccgatgtccagcgtcttacctgttcaatatttagactga-ttagctcatgagatct 65
|||||| |||||||||||||||||||||||||||||||||||| | | ||| || |||
Sbjct: 3 gtgaccaatgtccagcgtcttacctgttcaatatttagactgaccaaacccat-agctct 61
Query: 66 aatactgtcaggtaatgacgctggattatcttgtcatt 103
|||||||||||||||||||||||||| ||||||||||
Sbjct: 62 aatactgtcaggtaatgacgctggatagtcttgtcatt 99
>38120_bma-mir-236:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 atctaatactgtcaggtaatgacg 85
||||||||||||||||||||||||
Sbjct: 48 atctaatactgtcaggtaatgacg 71
>35047_api-mir-8:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tctaatactgtcaggtaatga 83
|||||||||||||||||||||
Sbjct: 39 tctaatactgtcaggtaatga 59
