miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38356_cel-mir-252:mirbase
Length = 98
Score = 95.6 bits (48), Expect = 5e-21
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 1 ggtctctttcagttataagtagtagtgccgcaggtaaccactcaaatatatggtttacct 60
||||||||||||||||||||||||||||||||||||||| | || | || ||||||
Sbjct: 7 ggtctctttcagttataagtagtagtgccgcaggtaaccgccagtctaaaaggcttacct 66
Query: 61 actgccttctgcttagaattgaaatatcgatg 92
||||||||||||||| ||||||||||| ||||
Sbjct: 67 actgccttctgcttaaaattgaaatattgatg 98
>38226_cbr-mir-252:mirbase
Length = 99
Score = 87.7 bits (44), Expect = 1e-18
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 1 ggtctctttcagttataagtagtagtgccgcaggtaaccact--caaatatatggtttac 58
||||||| |||||||||||||||||||||||||||||| || || | | ||||||||
Sbjct: 2 ggtctctcccagttataagtagtagtgccgcaggtaaccgcttccagaaaattggtttac 61
Query: 59 ctactgccttctgcttagaattg 81
|||||||||||||||||||||||
Sbjct: 62 ctactgccttctgcttagaattg 84
>38637_ppc-mir-252:mirbase
Length = 105
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 taagtagtagtgccgcaggtaacca 40
|||||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaacca 51
>38769_cte-mir-252b:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taagtagtagtgccgcaggtaa 37
||||||||||||||||||||||
Sbjct: 22 taagtagtagtgccgcaggtaa 43
>34893_sko-mir-252b:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taagtagtagtgccgcaggtaa 37
||||||||||||||||||||||
Sbjct: 22 taagtagtagtgccgcaggtaa 43
>34977_isc-mir-252b:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taagtagtagtgccgcaggtaa 37
||||||||||||||||||||||
Sbjct: 21 taagtagtagtgccgcaggtaa 42
>35018_dpu-mir-252b:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taagtagtagtgccgcaggtaa 37
||||||||||||||||||||||
Sbjct: 22 taagtagtagtgccgcaggtaa 43
>34835_spu-mir-252b:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 16 taagtagtagtgccgcaggta 36
|||||||||||||||||||||
Sbjct: 22 taagtagtagtgccgcaggta 42
