miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38613_ppc-mir-63c-4:mirbase
Length = 116
Score = 222 bits (112), Expect = 4e-59
Identities = 115/116 (99%)
Strand = Plus / Plus
Query: 1 ggtacccgaaccataatccatgcggggttccattcgcatgagtttcatggactcgattca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacccgaaccataatccatgtggggttccattcgcatgagtttcatggactcgattca 60
Query: 61 tagatctatgacactcaatgcgagatgggacctcggtggaccaatggttcggtacc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagatctatgacactcaatgcgagatgggacctcggtggaccaatggttcggtacc 116
>38612_ppc-mir-63c-3:mirbase
Length = 116
Score = 206 bits (104), Expect = 3e-54
Identities = 113/116 (97%)
Strand = Plus / Plus
Query: 1 ggtacccgaaccataatccatgcggggttccattcgcatgagtttcatggactcgattca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacccgaaccataatccatgtggggttccattcgcatgagtttcatggactcgattca 60
Query: 61 tagatctatgacactcaatgcgagatgggacctcggtggaccaatggttcggtacc 116
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 61 tagatctatgacactcaatgcgagatgggacctcggtggaccattggtacggtacc 116
>38610_ppc-mir-63c-1:mirbase
Length = 103
Score = 172 bits (87), Expect = 4e-44
Identities = 96/99 (96%)
Strand = Plus / Plus
Query: 12 cataatccatgcggggttccattcgcatgagtttcatggactcgattcatagatctatga 71
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 catagtccatgtggggttccattcgcatgagtttcatggactcgattcatagatctatga 64
Query: 72 cactcaatgcgagatgggacctcggtggaccaatggttc 110
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 65 cactcaatgcgagatgggacctcggtgggccaatggttc 103
>38616_ppc-mir-63f:mirbase
Length = 102
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 24 ggggttccattcgcatgagtttcatggact 53
||||||||||||| ||||||||||||||||
Sbjct: 16 ggggttccattcgtatgagtttcatggact 45
