miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38613_ppc-mir-63c-4:mirbase
Length = 116
Score = 214 bits (108), Expect = 1e-56
Identities = 114/116 (98%)
Strand = Plus / Plus
Query: 1 ggtacccgaaccataatccatgtggggttccattcgcatgagtttcatggactcgattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacccgaaccataatccatgtggggttccattcgcatgagtttcatggactcgattca 60
Query: 61 tagatctatgacactcaatgcgagatgggacctcggtggaccattggtacggtacc 116
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 61 tagatctatgacactcaatgcgagatgggacctcggtggaccaatggttcggtacc 116
>38611_ppc-mir-63c-2:mirbase
Length = 116
Score = 206 bits (104), Expect = 3e-54
Identities = 113/116 (97%)
Strand = Plus / Plus
Query: 1 ggtacccgaaccataatccatgtggggttccattcgcatgagtttcatggactcgattca 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacccgaaccataatccatgcggggttccattcgcatgagtttcatggactcgattca 60
Query: 61 tagatctatgacactcaatgcgagatgggacctcggtggaccattggtacggtacc 116
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 61 tagatctatgacactcaatgcgagatgggacctcggtggaccaatggttcggtacc 116
>38610_ppc-mir-63c-1:mirbase
Length = 103
Score = 168 bits (85), Expect = 6e-43
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 12 cataatccatgtggggttccattcgcatgagtttcatggactcgattcatagatctatga 71
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 catagtccatgtggggttccattcgcatgagtttcatggactcgattcatagatctatga 64
Query: 72 cactcaatgcgagatgggacctcggtggaccattggt 108
|||||||||||||||||||||||||||| ||| ||||
Sbjct: 65 cactcaatgcgagatgggacctcggtgggccaatggt 101
>38616_ppc-mir-63f:mirbase
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 23 tggggttccattcgcatgagtttcatggact 53
|||||||||||||| ||||||||||||||||
Sbjct: 15 tggggttccattcgtatgagtttcatggact 45