miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38652_ppc-mir-2235-7:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
Query: 61 ggagcattgtatgatcgggattcggaccct 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ggagcattgtatgatcgggcttcggaccct 90
>38649_ppc-mir-2235-4:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
Query: 61 ggagcattgtatgatcgggattcggaccct 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ggagcattgtatgatcgggcttcggaccct 90
>38648_ppc-mir-2235-3:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
Query: 61 ggagcattgtatgatcgggattcggaccct 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ggagcattgtatgatcgggcttcggaccct 90
>38647_ppc-mir-2235-2:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
Query: 61 ggagcattgtatgatcgggattcggaccct 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ggagcattgtatgatcgggcttcggaccct 90
>38646_ppc-mir-2235-1:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
Query: 61 ggagcattgtatgatcgggattcggaccct 90
||||||||||||||||||| ||||||||||
Sbjct: 61 ggagcattgtatgatcgggcttcggaccct 90
>38650_ppc-mir-2235-5:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccg 60
Query: 61 ggagcattgtatgatcgggattcggaccct 90
||||||||||||||||||| ||| ||||||
Sbjct: 61 ggagcattgtatgatcgggcttcagaccct 90
>38653_ppc-mir-2235-8:mirbase
Length = 87
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 4 ccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccggga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ccgctcttgcccgctcattcaatattgccggtttgaacgaaattgatcagttcaccggga 62
Query: 64 gcattgtatgatcgggattcggacc 88
|||||||||||||||| ||||||||
Sbjct: 63 gcattgtatgatcgggcttcggacc 87
