miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38661_ppc-mir-2238a-3:mirbase
Length = 97
Score = 123 bits (62), Expect = 3e-29
Identities = 90/98 (91%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 9 ggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttcg 68
||||||||||| ||||||||||| || ||||| |||||||| ||||| ||||||| |||
Sbjct: 1 ggtaactagtcgatcctctttcccgtt-cactcttctcgtcagtcgatgattgaatatcg 59
Query: 69 aatgacagatcagtgcgcgagaaggaagactagcttcc 106
||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aatgacagatcagtgcgcgagaaggaagactagcttcc 97
>38662_ppc-mir-2238a-4:mirbase
Length = 120
Score = 121 bits (61), Expect = 1e-28
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 8 tggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttc 67
||||| |||||| ||||||||||| || ||||| |||||||| ||||| ||||||| ||
Sbjct: 11 tggtatctagtcgatcctctttcccatt-cactcttctcgtcagtcgatgattgaatatc 69
Query: 68 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 108
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 110
>38660_ppc-mir-2238a-2:mirbase
Length = 111
Score = 121 bits (61), Expect = 1e-28
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 8 tggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttc 67
||||| |||||| ||||||||||| || ||||| |||||||| ||||| ||||||| ||
Sbjct: 7 tggtatctagtcgatcctctttcccatt-cactcttctcgtcagtcgatgattgaatatc 65
Query: 68 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 108
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 106
>38667_ppc-mir-2238e:mirbase
Length = 97
Score = 91.7 bits (46), Expect = 1e-19
Identities = 86/98 (87%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 9 ggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttcg 68
|||| |||||| || ||||||||| || ||||| |||||||| ||||| || |||| | |
Sbjct: 1 ggtacctagtcttttctctttcccgtt-cactcttctcgtcagtcgatgatcgaatatag 59
Query: 69 aatgacagatcagtgcgcgagaaggaagactagcttcc 106
||||||||| ||||||||||||||||||||||||||||
Sbjct: 60 aatgacagaacagtgcgcgagaaggaagactagcttcc 97
>38665_ppc-mir-2238c:mirbase
Length = 106
Score = 89.7 bits (45), Expect = 4e-19
Identities = 93/105 (88%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 5 ttatggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaat 64
||||| || |||||| ||||||||||| || ||||| |||||||| ||||| || ||||
Sbjct: 1 ttatgatacctagtcgatcctctttcccgtt-cactcttctcgtcagtcgatgat-gaat 58
Query: 65 ttcgaatgacagatca-gtgcgcgagaaggaagactagcttccgt 108
||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 59 ttcgaatgacagaacaagtgcgcgagaaggaagactagcttccgt 103
