miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38662_ppc-mir-2238a-4:mirbase
Length = 120
Score = 214 bits (108), Expect = 1e-56
Identities = 108/108 (100%)
Strand = Plus / Plus
Query: 4 ttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaata 67
Query: 64 tcgaatgacagatcagtgcgcgagaaggaagactagcttccgtgatgg 111
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tcgaatgacagatcagtgcgcgagaaggaagactagcttccgtgatgg 115
>38661_ppc-mir-2238a-3:mirbase
Length = 97
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 8 ggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaatatcga 67
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtaactagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcga 60
Query: 68 atgacagatcagtgcgcgagaaggaagactagcttcc 104
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgacagatcagtgcgcgagaaggaagactagcttcc 97
>38665_ppc-mir-2238c:mirbase
Length = 106
Score = 139 bits (70), Expect = 5e-34
Identities = 93/98 (94%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 13 ctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaatatcgaatgac 72
||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 10 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 68
Query: 73 agatc-agtgcgcgagaaggaagactagcttccgtgat 109
||| | ||||||||||||||||||||||||||||||||
Sbjct: 69 agaacaagtgcgcgagaaggaagactagcttccgtgat 106
>38667_ppc-mir-2238e:mirbase
Length = 97
Score = 131 bits (66), Expect = 1e-31
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 23 ctctttcccattcactcttctcgtcagtcgatgattgaatatcgaatgacagatcagtgc 82
||||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 16 ctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaatgacagaacagtgc 75
Query: 83 gcgagaaggaagactagcttcc 104
||||||||||||||||||||||
Sbjct: 76 gcgagaaggaagactagcttcc 97
>38659_ppc-mir-2238a-1:mirbase
Length = 118
Score = 121 bits (61), Expect = 1e-28
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 7 tggtatctagtcgatcctctttcccatt-cactcttctcgtcagtcgatgattgaatatc 65
||||| |||||| ||||||||||| || ||||| |||||||| ||||| ||||||| ||
Sbjct: 8 tggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttc 67
Query: 66 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 106
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 108
