miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38662_ppc-mir-2238a-4:mirbase
Length = 120
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 1 ggtaactagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcga 60
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12 ggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaatatcga 71
Query: 61 atgacagatcagtgcgcgagaaggaagactagcttcc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 72 atgacagatcagtgcgcgagaaggaagactagcttcc 108
>38660_ppc-mir-2238a-2:mirbase
Length = 111
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 1 ggtaactagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcga 60
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 8 ggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaatatcga 67
Query: 61 atgacagatcagtgcgcgagaaggaagactagcttcc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 68 atgacagatcagtgcgcgagaaggaagactagcttcc 104
>38667_ppc-mir-2238e:mirbase
Length = 97
Score = 139 bits (70), Expect = 4e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 16 ctctttcccgttcactcttctcgtcagtcgatgattgaatatcgaatgacagatcagtgc 75
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 16 ctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaatgacagaacagtgc 75
Query: 76 gcgagaaggaagactagcttcc 97
||||||||||||||||||||||
Sbjct: 76 gcgagaaggaagactagcttcc 97
>38665_ppc-mir-2238c:mirbase
Length = 106
Score = 137 bits (69), Expect = 2e-33
Identities = 89/93 (95%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 6 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcgaatgac 65
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 10 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 68
Query: 66 agatc-agtgcgcgagaaggaagactagcttcc 97
||| | |||||||||||||||||||||||||||
Sbjct: 69 agaacaagtgcgcgagaaggaagactagcttcc 101
>38659_ppc-mir-2238a-1:mirbase
Length = 118
Score = 123 bits (62), Expect = 2e-29
Identities = 90/98 (91%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 ggtaactagtcgatcctctttcccgtt-cactcttctcgtcagtcgatgattgaatatcg 59
||||||||||| ||||||||||| || ||||| |||||||| ||||| ||||||| |||
Sbjct: 9 ggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttcg 68
Query: 60 aatgacagatcagtgcgcgagaaggaagactagcttcc 97
||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aatgacagatcagtgcgcgagaaggaagactagcttcc 106
