miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38662_ppc-mir-2238a-4:mirbase
Length = 120
Score = 139 bits (70), Expect = 5e-34
Identities = 93/98 (94%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 10 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 68
||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 17 ctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaatatcgaatgac 76
Query: 69 agaacaagtgcgcgagaaggaagactagcttccgtgat 106
||| | ||||||||||||||||||||||||||||||||
Sbjct: 77 agatc-agtgcgcgagaaggaagactagcttccgtgat 113
>38660_ppc-mir-2238a-2:mirbase
Length = 111
Score = 139 bits (70), Expect = 5e-34
Identities = 93/98 (94%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 10 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 68
||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 13 ctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaatatcgaatgac 72
Query: 69 agaacaagtgcgcgagaaggaagactagcttccgtgat 106
||| | ||||||||||||||||||||||||||||||||
Sbjct: 73 agatc-agtgcgcgagaaggaagactagcttccgtgat 109
>38661_ppc-mir-2238a-3:mirbase
Length = 97
Score = 137 bits (69), Expect = 2e-33
Identities = 89/93 (95%), Gaps = 2/93 (2%)
Strand = Plus / Plus
Query: 10 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 68
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 6 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaatatcgaatgac 65
Query: 69 agaacaagtgcgcgagaaggaagactagcttcc 101
||| | |||||||||||||||||||||||||||
Sbjct: 66 agatc-agtgcgcgagaaggaagactagcttcc 97
>38667_ppc-mir-2238e:mirbase
Length = 97
Score = 119 bits (60), Expect = 4e-28
Identities = 89/96 (92%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 7 tacctagtcgatcctctttcccgttcactcttctcgtcagtcgatgat-gaatttcgaat 65
||||||||| | ||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct: 3 tacctagtcttttctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaat 62
Query: 66 gacagaacaagtgcgcgagaaggaagactagcttcc 101
|||||||| |||||||||||||||||||||||||||
Sbjct: 63 gacagaac-agtgcgcgagaaggaagactagcttcc 97
>38659_ppc-mir-2238a-1:mirbase
Length = 118
Score = 89.7 bits (45), Expect = 4e-19
Identities = 93/105 (88%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 1 ttatgatacctagtcgatcctctttcccgtt-cactcttctcgtcagtcgatgat-gaat 58
||||| || |||||| ||||||||||| || ||||| |||||||| ||||| || ||||
Sbjct: 5 ttatggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaat 64
Query: 59 ttcgaatgacagaacaagtgcgcgagaaggaagactagcttccgt 103
||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 65 ttcgaatgacagatca-gtgcgcgagaaggaagactagcttccgt 108
