miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38661_ppc-mir-2238a-3:mirbase
Length = 97
Score = 139 bits (70), Expect = 4e-34
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 16 ctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaatgacagaacagtgc 75
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 16 ctctttcccgttcactcttctcgtcagtcgatgattgaatatcgaatgacagatcagtgc 75
Query: 76 gcgagaaggaagactagcttcc 97
||||||||||||||||||||||
Sbjct: 76 gcgagaaggaagactagcttcc 97
>38662_ppc-mir-2238a-4:mirbase
Length = 120
Score = 131 bits (66), Expect = 1e-31
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 16 ctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaatgacagaacagtgc 75
||||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 27 ctctttcccattcactcttctcgtcagtcgatgattgaatatcgaatgacagatcagtgc 86
Query: 76 gcgagaaggaagactagcttcc 97
||||||||||||||||||||||
Sbjct: 87 gcgagaaggaagactagcttcc 108
>38660_ppc-mir-2238a-2:mirbase
Length = 111
Score = 131 bits (66), Expect = 1e-31
Identities = 78/82 (95%)
Strand = Plus / Plus
Query: 16 ctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaatgacagaacagtgc 75
||||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 23 ctctttcccattcactcttctcgtcagtcgatgattgaatatcgaatgacagatcagtgc 82
Query: 76 gcgagaaggaagactagcttcc 97
||||||||||||||||||||||
Sbjct: 83 gcgagaaggaagactagcttcc 104
>38665_ppc-mir-2238c:mirbase
Length = 106
Score = 119 bits (60), Expect = 4e-28
Identities = 89/96 (92%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 3 tacctagtcttttctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaat 62
||||||||| | ||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct: 7 tacctagtcgatcctctttcccgttcactcttctcgtcagtcgatgat-gaatttcgaat 65
Query: 63 gacagaac-agtgcgcgagaaggaagactagcttcc 97
|||||||| |||||||||||||||||||||||||||
Sbjct: 66 gacagaacaagtgcgcgagaaggaagactagcttcc 101
>38659_ppc-mir-2238a-1:mirbase
Length = 118
Score = 91.7 bits (46), Expect = 9e-20
Identities = 86/98 (87%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 ggtacctagtcttttctctttcccgtt-cactcttctcgtcagtcgatgatcgaatatag 59
|||| |||||| || ||||||||| || ||||| |||||||| ||||| || |||| | |
Sbjct: 9 ggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttcg 68
Query: 60 aatgacagaacagtgcgcgagaaggaagactagcttcc 97
||||||||| ||||||||||||||||||||||||||||
Sbjct: 69 aatgacagatcagtgcgcgagaaggaagactagcttcc 106
